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LOCUS NM_132302 2668 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_132302 VERSION NM_132302.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2668) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2668) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2668) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2668) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2668) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2668) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2668) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2668) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2668) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2668) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2668) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2668) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2668) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2668) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2668) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2668) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2668) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2668) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2668) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2668) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2668) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2668) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2668) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_132302.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2668 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2668 /gene="Bap111" /locus_tag="Dmel_CG7055" /gene_synonym="anon-EST:Liang-1.83; BAF57; BAP 111; bap111; BAP111; CG7055; clone 1.83; dalao; Dalao; Dmel\CG7055" /note="Brahma associated protein 111kD" /map="8C14-8C14" /db_xref="FLYBASE:FBgn0030093" /db_xref="GeneID:31846" CDS 115..2364 /gene="Bap111" /locus_tag="Dmel_CG7055" /gene_synonym="anon-EST:Liang-1.83; BAF57; BAP 111; bap111; BAP111; CG7055; clone 1.83; dalao; Dalao; Dmel\CG7055" /note="CG7055 gene product from transcript CG7055-RA; CG7055-PA; Bap111-PA; BRM-associated protein 111; dalao" /codon_start=1 /product="brahma associated protein 111kD" /protein_id="NP_572530.1" /db_xref="FLYBASE:FBpp0071235" /db_xref="GeneID:31846" /db_xref="FLYBASE:FBgn0030093" /translation="MALPSNYKQIAVGGQGSATPLQGGGGGSGGGSRSRSSGGGGGGD RNKDQTPIFTHSNYGNPAFTPQKVTKSSSSKNQNESRLPKPPKPPEKPILPYMRYSKR VWDSVKAKHPELKLWELGKKIGAMWKLLPEDEKTEFIDEYEAEKLEYEKSLKAYHQTP AYQAYMSAKSKVKTDVDMHETPSRGGGSKSQHERRIDIQPAEDEDDQDEGYTTKHLAY ARYLHNHRLINEIFSEAVVPDVRSVVTTTRMQVLKRQVSSLTMHQTKLEAELQQMEEK FEAKKQRMVESSEAFQEELKRHCKPAVDEETFQKMVLRMYEDIKRDRQRLDEPNANAN SAANPAAAAATAAAAPVTRSEEAVKPPTQPGQPAATPAGQEPASAVPAPAAPPKETPP AVKPATLNPTPSSTPTPAPAVHVHETASKTDPEPMDIEPPPKPSVPPPPIKPEKLEMA AALPPQSTLVEPPKTEPAKVVAQPGKVPTPVPTPTPPPEVAPAAGAATAATTTTTTTP TPPPVPQQVPLPQQQGGPAPPPGMPQMHPHPGHPPPGHSLMPPHMGPHQPPPGMPGLP PPPPHTGYANYGGPPHGPPPGPPGGPARPYYQPQYGGHPTPQPYYAPFSPYQQSYGPP PGSHYMSPRPPPPQHNGNPGHPYAPEHGSNPPPPQQQQQQQPPPGHLHEPSGGGPGAP GGGAGAAAAAAPGAGVYPTPGAGAGPGAPPGPAGGAPLGEAAVAGGVAPPAATAPGKH PEAEKHEAD" misc_feature 391..585 /gene="Bap111" /locus_tag="Dmel_CG7055" /gene_synonym="anon-EST:Liang-1.83; BAF57; BAP 111; bap111; BAP111; CG7055; clone 1.83; dalao; Dalao; Dmel\CG7055" /note="high mobility group (HMG)-box found in SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 (SMARCE1) and similar proteins; Region: HMG-box_SMARCE1; cd21983" /db_xref="CDD:438799" misc_feature order(391..405,412..417,436..438,472..477,484..486, 493..498,517..519,529..531,538..540,550..552,559..561) /gene="Bap111" /locus_tag="Dmel_CG7055" /gene_synonym="anon-EST:Liang-1.83; BAF57; BAP 111; bap111; BAP111; CG7055; clone 1.83; dalao; Dalao; Dmel\CG7055" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:438799" ORIGIN 1 ttagaatcag atacggccac acctccacca acgccgacag aaaatggcgt ctgtctgaaa 61 attgttattt ctcttggaaa atccatacaa atttgaccag cgaattgcac aaagatggcc 121 ctgccaagca actacaagca gatagccgtt ggcggccagg gatcggccac accactccag 181 ggcggcggcg gtggctccgg cggcggcagc cggtcgcgtt catccggcgg cggaggtggt 241 ggcgatcgca acaaggatca gacgcccatc ttcacgcaca gcaactatgg gaatccggca 301 ttcacgccac agaaggtaac caagtcgtcg agcagcaaga accagaacga atcaaggcta 361 cccaagccac caaagccgcc ggagaagccc attttgccct acatgcggta ttcgaaacgc 421 gtctgggata gcgtcaaggc gaagcatcca gagctgaagc tgtgggagct gggtaagaag 481 atcggtgcca tgtggaagtt gctgcccgag gatgagaaga cggagttcat tgacgaatac 541 gaggcggaga agctggagta cgagaaatcg ctaaaggcct accaccagac gcccgcctat 601 caggcctaca tgtcggccaa gagcaaggtg aagaccgacg tggatatgca tgagacaccg 661 tcacgcggtg gcggcagtaa gtcgcagcat gagcgacgca tcgacattca gccggcggag 721 gacgaggatg accaggacga agggtatacg accaagcact tggcctacgc ccgctatctg 781 cacaaccatc gcctgattaa cgagatattc tcggaggccg ttgtaccaga tgtgcgttca 841 gtggtgacca ccacgcggat gcaggtgctc aagcggcagg tcagctcgtt gacgatgcac 901 cagaccaaac ttgaggcgga actgcagcag atggaggaga agttcgaggc caagaagcag 961 cgcatggtgg agtccagcga agccttccag gaggagctaa agcgccactg caagccggcg 1021 gtcgacgagg aaactttcca gaagatggtg cttcgcatgt acgaggacat caagcgcgat 1081 cgccagcgat tggatgaacc gaatgcgaat gcgaatagcg cagcgaatcc tgctgcagct 1141 gccgctacag ctgccgccgc tccagtgacg aggagcgagg aggcagtgaa gccgccaacg 1201 cagccaggtc agcccgctgc cacacccgct ggccaagagc cggcgtcggc ggtaccagcg 1261 ccagcagctc cgcccaagga gacaccgccg gctgtgaagc ccgctacact caatcccaca 1321 ccgagttcaa cgcctacgcc ggcgccagcg gtgcacgtgc acgaaactgc cagcaaaacg 1381 gatcccgagc ccatggacat tgagccaccg ccgaagccat cggttccgcc gccacccatc 1441 aagccagaga agctggagat ggccgctgcc ctgcctccgc agtcaacgct agtcgagcca 1501 cccaaaacgg aacccgccaa agtggtggcc cagcccggca aggtgcccac accggtgccg 1561 acacccacac cgccgcctga ggtggctcca gcggccggag cagctactgc agcgaccaca 1621 acaacgacga cgacaccaac gccaccgccg gtgccacaac aggtgccact gccgcagcaa 1681 cagggcgggc cagctccacc gcccggcatg ccgcagatgc atccacatcc cggccatccg 1741 ccacccggac attccttgat gccaccgcac atggggccgc atcagccgcc gccgggaatg 1801 cccggtctgc cgccgccacc tccgcacacg ggttatgcta actacggcgg accaccacat 1861 ggcccgccgc ctggaccacc cggtggacca gcacgaccct attaccagcc ccagtacggc 1921 ggacatccca cgccacagcc ctactacgca ccgttctcgc cgtatcagca gtcctatggc 1981 ccgccacctg gctcgcacta catgtcaccg cgtccgccgc cgccgcagca caatggcaat 2041 cccgggcatc cgtatgcgcc ggagcatgga agcaatccac cgccaccaca gcagcagcaa 2101 caacaacaac cgccaccagg acacctgcac gagccgagcg gtggaggacc cggggcccca 2161 ggcggtggag ctggagcggc agcagcagcg gcgcccggag ccggagtgta tcccacgccc 2221 ggggcaggag cgggaccagg agcaccacct ggaccagctg gaggagcacc gctgggcgag 2281 gccgcagtag ctgggggagt agctccgcca gcggcaacag cacctggcaa gcatccagag 2341 gcggagaagc acgaggcgga ctaagacaag gaatcccacc acccagatcc tagttgtggt 2401 ccctaactta tatatgaatc gatccctggt gttgtaacat agctgtcccc tcccggaact 2461 tccggaaggc aaacaaccgg aatgctctta acttgaaatc cctatttagg cgccacacct 2521 aagaactcca catcaatccc attctcaaat taagtttata tcactttttt ttcgcgaagc 2581 ctaattttaa tattttaata actgagtgtg cgtcgcattc tggactgtat gctaaatatg 2641 caaataaatt aaatgtacga ttatatgt