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LOCUS NM_132294 2617 bp mRNA linear INV 26-DEC-2023 transcript variant A (APC4), mRNA. ACCESSION NM_132294 VERSION NM_132294.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2617) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2617) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2617) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2617) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2617) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2617) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2617) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2617) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2617) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2617) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2617) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2617) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2617) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2617) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2617) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2617) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2617) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2617) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2617) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2617) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2617) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2617) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2617) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Dec 17, 2009 this sequence version replaced NM_132294.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2617 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2617 /gene="APC4" /locus_tag="Dmel_CG32707" /gene_synonym="CG32707; CG4350; Dmel\CG32707" /note="Anaphase Promoting Complex subunit 4" /map="8C4-8C7" /db_xref="FLYBASE:FBgn0052707" /db_xref="GeneID:31835" CDS 124..2451 /gene="APC4" /locus_tag="Dmel_CG32707" /gene_synonym="CG32707; CG4350; Dmel\CG32707" /note="CG32707 gene product from transcript CG32707-RA; CG32707-PA; APC4-PA; anaphase promoting complex 4" /codon_start=1 /product="anaphase promoting complex subunit 4, isoform A" /protein_id="NP_572522.2" /db_xref="FLYBASE:FBpp0071222" /db_xref="GeneID:31835" /db_xref="FLYBASE:FBgn0052707" /translation="MAQTSSMKLLGARNMSCIVERMEWNNKMDLIAYGTEKGEVVIQR LNWQKIVTFPTPGEDVRVRSLSWQMDETLLAVGYSNGKVALLDAESGTIISGLIYEDD IKKVYFSKAINSQENLGTYTCNVKDKHRRFLPKLQPMTNIDPCLKTLDQKSFPKGSPC FLVVIMRSGKVHLLLLGALQAGSIDLTQHILHPHEFDVYDVRMNGDCNAIYALLRDGQ ELILLHFQNQVLQDCMAPMLELATHCAHILETKNYINDTQQCLTEAWETVQLEMDNKL TRYANSQPYGVISAHFLELHVFGFATFEVEEFLFETLSEKGFKKIANSVDLSLSNLQS LVFKQLNGAAINMFYFLNTIAGFGRMSHFFESLISPDVANEAMRACGGFVLKVHELQR TIDTLAYDMKLFHAWMIFTILRLSHQEIPDDLVLTEEENIAMADFICAMEPELDDRSD DEDELDSQSQTPPPARSKFNLERVGQYLDNAYLTQLYPRDPVQLWEEMVTDNECLSNC KLFVPHDVNLSLVQQRDKMFNAIDAVFHKPTESISGSFKVSSTVICNDLPPMEPGEDH RDRDLVTCTYYVNEASRTDMLACTISGQEAMILEFSRAGDECVRCTRITLEPGLFTTS VSEDFCYLRFVDLQFYNESSLSILAQSINAGPGMRPHSFFIQFSLTAALNYSTQHRMG PLVKLSEATVSQSIHDIADGAAFKGLDGFSDMLAVSGSRKVATVLSDRKRKMTIFEME IEEEEDDTEMSQASFLDISKESVLAGVPDAEKQEA" misc_feature 187..456 /gene="APC4" /locus_tag="Dmel_CG32707" /gene_synonym="CG32707; CG4350; Dmel\CG32707" /note="Anaphase-promoting complex subunit 4 WD40 domain; Region: ANAPC4_WD40; pfam12894" /db_xref="CDD:403945" misc_feature 787..1377 /gene="APC4" /locus_tag="Dmel_CG32707" /gene_synonym="CG32707; CG4350; Dmel\CG32707" /note="Anaphase-promoting complex, cyclosome, subunit 4; Region: ANAPC4; pfam12896" /db_xref="CDD:463744" ORIGIN 1 atcgatagca ggaatattat tcgatagact gcaacaggag ccggcaaagt gtaaactaaa 61 attattatat tgaaatattt gatgcacagt agagacgccg cgagccaatt ctagcgtgga 121 aagatggcac aaacgagctc catgaagttg ctgggcgccc gcaacatgtc ctgcattgtg 181 gagcgtatgg agtggaacaa caagatggat ctaattgcct acggaacgga aaagggtgag 241 gtggtcatcc agcgtctgaa ctggcaaaag attgtcacct ttcccacgcc cggcgaggat 301 gtgcgggtgc gttcgctcag ctggcaaatg gacgagacac tcctggcggt tggctacagc 361 aacggcaagg tggcgctcct ggacgccgag agcggaacga taatatcagg cctcatttac 421 gaggacgaca tcaagaaggt ctacttcagc aaggccatca actcgcagga gaacctagga 481 acttacacat gtaatgtcaa ggataaacac cgaaggttcc tgcccaaact gcagccaatg 541 accaatattg atccgtgcct gaaaaccctg gaccaaaagt cctttccaaa gggatcacct 601 tgctttctgg tggtgataat gcgcagcggc aaagtgcacc tactgctcct aggagccctg 661 caggcgggca gcatcgatct cacacagcac attctgcatc cgcacgagtt cgatgtgtac 721 gatgtgagga tgaacggaga ctgtaatgcc atttatgctc ttttgcggga cggtcaggag 781 ctgatattgc tgcactttca aaaccaggtg ctgcaggatt gcatggcacc catgctggag 841 ctggcaacgc attgtgccca catcctagaa accaaaaact atattaatga cacgcaacaa 901 tgtttgacgg aggcctggga gaccgtgcag ttggaaatgg acaataagct aaccaggtac 961 gccaattccc agccgtacgg agtgatatct gcccattttc tggagctgca cgtctttgga 1021 ttcgctacct tcgaggtaga ggagtttttg ttcgagactc tttccgagaa gggtttcaag 1081 aagattgcca actcggtgga ccttagttta agcaatctgc agagcttagt tttcaagcaa 1141 ctgaatggag cagccatcaa catgttctat ttcctcaaca caatcgcggg tttcggtcgc 1201 atgtcgcact tttttgagtc cctaatctct ccggatgtgg ccaacgaagc gatgcgagcc 1261 tgtggaggat ttgtgctcaa agtacacgag ctgcagcgaa caatcgacac gttggcgtac 1321 gacatgaagc tctttcacgc ctggatgata ttcacaatac tacggctgtc gcatcaggag 1381 attcccgatg acctggtgct caccgaggag gagaacattg ccatggccga cttcatctgc 1441 gccatggaac cggaattgga cgatcgcagc gatgatgagg atgaactgga ttcgcaatcc 1501 caaacgccac cgcctgcgcg cagcaaattc aatttggaac gagtgggcca gtatctggac 1561 aatgcctacc tcacacagct ctatcccagg gatccagtcc agctgtggga ggagatggta 1621 accgacaacg aatgcctaag caactgcaaa ctttttgtgc cccacgacgt gaacctgtcg 1681 cttgtgcagc agcgcgacaa gatgttcaat gccatcgatg ccgtgttcca taagccaacg 1741 gagagcataa gcggaagttt caaggtctcc tcgacggtga tatgcaacga cctgccgccc 1801 atggagcccg gcgaggatca tagggacagg gatctcgtca cctgcaccta ttacgttaac 1861 gaagcgtcca ggaccgacat gttggcctgc accatcagcg ggcaggaggc catgatactc 1921 gagtttagtc gagcgggcga tgaatgcgtg cgctgcacta gaattacact ggagccagga 1981 ttatttacaa catccgtgtc cgaagatttc tgttacctac gcttcgtcga cctgcagttc 2041 tacaatgaat cttcgctatc gatactggcc cagtccataa atgcgggacc tggcatgcga 2101 ccgcatagct tctttataca attctcactg accgcggcgc tgaattacag cacacagcac 2161 cgaatgggac cgttggtcaa gctgagcgaa gccaccgtgt cgcaaagcat ccatgacatt 2221 gccgatggtg ccgccttcaa gggactggac ggatttagcg acatgttggc cgtctcgggc 2281 agcaggaagg tggccaccgt tctctccgat cgcaagcgca agatgaccat ttttgagatg 2341 gaaatcgagg aggaggagga tgacacggaa atgtcccagg cctcgtttct ggacatcagc 2401 aaagagtctg tgctggctgg cgttcccgat gcggagaaac aggaggcgta gtcttgaatc 2461 tattgaattt aaattatatt gattgttgtg tgataactta aaatgtttcc aataatttta 2521 tattttacaa ttcgtaaagg cattggtggt agaaaagaat ggttaaaatt cttgttacga 2581 tttgtccgtt aaaatagggc tgaataaata atctgtt