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LOCUS NM_132268 3068 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_132268 VERSION NM_132268.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3068) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3068) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3068) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3068) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3068) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3068) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3068) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3068) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3068) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3068) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3068) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3068) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3068) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3068) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3068) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3068) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3068) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3068) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3068) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3068) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3068) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3068) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3068) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_132268.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3068 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3068 /gene="Rubicon" /locus_tag="Dmel_CG12772" /gene_synonym="CG12772; Dmel\CG12772; dRubicon; FBgn 30055" /map="8A1-8A1" /db_xref="FLYBASE:FBgn0030055" /db_xref="GeneID:31803" CDS 145..2628 /gene="Rubicon" /locus_tag="Dmel_CG12772" /gene_synonym="CG12772; Dmel\CG12772; dRubicon; FBgn 30055" /note="CG12772 gene product from transcript CG12772-RA; CG12772-PA; Rubicon-PA" /codon_start=1 /product="rubicon, isoform A" /protein_id="NP_572496.1" /db_xref="FLYBASE:FBpp0071166" /db_xref="GeneID:31803" /db_xref="FLYBASE:FBgn0030055" /translation="MTTPPPPPTLASDAIEGAVYAAGEALHHQHDHPQQQQQQQQQQQ LARNSLLADLRRSTNFWFRAAKSTDGLQLLAQSCTRILQHGLLQPVELRRLADDFEFL LASAGKQQQQTKPQPYRPDYAARDSASMVNGVEEFLGEWTTRCLRARCLSQCLQTLVS DPELMELYYPSEEAFLRRSGDATALFVCLTAVQLNQSGLLSQLEVRHQVRHRRTCSQP NFSISPKLQAVPEERLQKRIFLRRLKSLPNLSQEDEELDDRAAFRRRCQTFSSSRSHK LREDHLDAPSTSSCSSHDSPRRIQLINCDDIKIWTDQTPQEVPEEVHEKLQQASKAST SVGGYLGSFFGSPPLYTSWFHRGVGDDLNASGDGGMLDTFLPVNGRKLKKQHTLFEGV SMLDEAASSTACISSAPWDIQGSAGDSTTSTTASSSVSITPGSDKMDQQSLASFLQMS RQTHNNTQLEKENAHFRISEACITAIEHVKWSRRLATPAGPTSHNLSEPNLMPYAEQI PGGGMQNHSAEAVGLQLISRFSEQQLPRLGHLKWLVSEQEAPQQLLPLPTPKQDHEQA SLTRGTSSWAPPRQQIIFTEHPSESRSKVLQKQNHRCAGCGMRVAKHLQQHFRYCTYL GKYLCTGCHRNQISAIPARILRSWDFRCYPVCSFAYRLIEQMYAFPLFHVPDLNSQLY KHKELAKARKRRLQLQAVKGFIANCRFATREQSFFNAIPAHITQDPDMWSMCDFVDVQ NTSMNRSIKEVIALSEQHVHNCVLCTGRAFVCEHCKGGELIYPWQRKVQRCDRCGACF HNGCWKVRSRCRNQNDPCPRCSRLQSRAS" misc_feature 292..765 /gene="Rubicon" /locus_tag="Dmel_CG12772" /gene_synonym="CG12772; Dmel\CG12772; dRubicon; FBgn 30055" /note="RUN domain found in Run domain Beclin-1-interacting and cysteine-rich domain-containing protein (RUBCN) and similar proteins; Region: RUN_RUBCN; cd17686" /db_xref="CDD:439048" misc_feature 1999..2616 /gene="Rubicon" /locus_tag="Dmel_CG12772" /gene_synonym="CG12772; Dmel\CG12772; dRubicon; FBgn 30055" /note="Putative zinc-RING and/or ribbon; Region: zf-RING_9; pfam13901" /db_xref="CDD:464030" ORIGIN 1 tattatcgaa tcaaacaata acaaaaaaaa atcgcattaa aaaacaatca aaacaagctg 61 aagttactcg gaatcaattg aatcgcgcac cgcgaatatg caaccgctcc gcccccccgc 121 gcccctttga cagtgtgcac agccatgacc acgcccccgc caccgcccac gctcgcatca 181 gacgcaattg aaggcgcggt gtacgcagca ggcgaggcac tgcatcatca acatgaccat 241 ccgcagcagc agcagcagca acaacaacaa cagcagctag cgaggaattc cctgctggcg 301 gacctgcgaa ggtcaacgaa tttctggttc cgtgcggcca aatcgacgga cggactgcag 361 ttgctggccc aaagctgcac tagaattttg cagcatggac tgttgcagcc cgtggaactt 421 cgccgactgg cggacgactt tgagtttctg ctggccagtg cgggaaaaca gcaacagcag 481 accaaaccgc agccttatcg accggattac gccgcccgag acagtgcgtc aatggtcaac 541 ggagtcgagg agtttctcgg cgagtggact acccgctgcc tgcgtgcccg ttgcctttcg 601 cagtgcctgc agacgctggt ctccgatccg gagctaatgg agctgtacta tcccagcgag 661 gaagccttcc tgcgacgatc cggtgatgcc accgccttgt tcgtttgcct aacggctgtc 721 cagctcaatc agagcggact gctaagccag ctggaggtta ggcatcaggt gcgccaccga 781 cgcacttgct cacagccgaa ctttagcata tcgcccaaac tgcaagcggt gccggaggag 841 agactgcaga aacgcatctt cctgcggcga ttgaagagcc taccaaattt aagtcaggag 901 gacgaggagc tggacgatag agcagccttc agacggcgtt gccaaacatt cagcagctcc 961 agaagccaca agctgaggga ggatcacttg gatgccccat ctaccagttc ttgttcgtcc 1021 cacgacagtc ccagacgcat tcagctgatc aactgtgatg acataaagat ctggaccgac 1081 caaacgcccc aggaagtgcc agaggaggtg cacgaaaagt tgcaacaggc atccaaagcg 1141 tccacgtcag tgggcggcta tctgggcagc ttcttcggct cgccgcctct ctataccagt 1201 tggtttcatc gcggcgtcgg cgacgatctg aatgcctcgg gagatggtgg tatgttggac 1261 accttcctgc ccgtgaacgg tcgaaagcta aagaagcagc acaccctctt cgagggcgtc 1321 agcatgctgg acgaggcggc atcctccaca gcctgcatct cgtcggcacc atgggatatt 1381 caaggatcag ccggcgacag taccacttcc acaacagcgt ccagttctgt gagcattacg 1441 cccggcagcg ataagatgga ccagcaatcg ctggcctcct tcctgcaaat gtcccggcaa 1501 acgcacaaca atacacaact ggagaaggag aacgctcact tcaggatttc ggaggcctgc 1561 attacggcca tagagcacgt caagtggagc aggagactgg cgacaccagc gggtccgacg 1621 agccataatc tgtcggagcc gaatttgatg ccctatgcag agcagattcc cggcggcggc 1681 atgcagaatc acagtgctga ggccgtgggt ctccagctaa tatcccgctt cagtgagcag 1741 cagctacccc gtttgggcca tctcaagtgg ctggtctccg agcaggaggc accgcaacaa 1801 ctgttgccgc tgcccacgcc gaaacaggat catgagcagg ccagtctgac cagaggcacc 1861 tccagttggg cgccgccgcg tcagcagatc atattcaccg aacatccctc ggagagccga 1921 tccaaggtgc tgcaaaagca gaatcatcgc tgtgccggct gtggaatgcg ggtggccaag 1981 cacctgcagc agcactttcg ctactgcact tacctgggca aatacctgtg caccggctgt 2041 catcgcaatc agatttctgc gattcccgcg aggattctgc gctcctggga ctttcgctgc 2101 tatccagtct gctcatttgc ctaccgtcta atcgagcaga tgtacgcctt tccgctgttc 2161 cacgtcccag atctgaatag ccaactgtac aagcacaagg aactggcgaa ggcgagaaag 2221 aggaggctgc aactgcaggc ggtcaaggga ttcatagcca actgtcgatt tgcaacgagg 2281 gagcagtcat tcttcaatgc cattccggcg cacattaccc aggatccgga catgtggtcc 2341 atgtgcgatt tcgttgacgt gcaaaatacc agcatgaatc gctccatcaa ggaggtgatc 2401 gcactgagcg aacagcacgt ccacaactgt gtgctatgta caggtcgtgc cttcgtctgt 2461 gagcactgca agggcggtga gctcatctat ccgtggcagc gaaaagtcca acgctgcgat 2521 cggtgcggtg cctgcttcca caacggctgc tggaaggtca ggagtcggtg tcgcaaccaa 2581 aacgatcctt gtcccaggtg ctcccgcctt caaagccgtg ccagctaaca tccgatcaaa 2641 gaaaatcgaa gggcaggata ggaattggcg aagaaatgta gtgaaatcca ctttcgcctc 2701 ggaaactgta tatacaaaat ttggttttgg cgataggaat ttgttttttt ttttttttgt 2761 tttttgtttt ttgtaattcg catagttttt agagttaggc cttttttttt ttgtaaatcc 2821 aaagttgctt attcgtaaag gtattgctga atatataaca tgttgctttc cgtaagtaat 2881 ttgtttataa aaaatctctt ttaggatcca tttgcttcta aacgaaacta gaaccaaatt 2941 gaaacatcac ttatttgcct ggaaaaagac gaatttttat ttaagaaagt attatttaaa 3001 aaaagcttgc ttattattaa ataacaaata acatgtcaca tacacactaa atattctaaa 3061 aatatgtt