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LOCUS NM_132265 2793 bp mRNA linear INV 26-DEC-2023 A (CG12065), mRNA. ACCESSION NM_132265 VERSION NM_132265.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2793) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2793) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2793) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2793) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2793) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2793) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2793) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2793) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2793) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2793) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2793) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2793) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2793) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2793) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2793) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2793) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2793) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2793) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2793) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2793) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2793) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2793) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2793) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132265.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2793 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2793 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /map="7F5-7F7" /db_xref="FLYBASE:FBgn0030052" /db_xref="GeneID:31798" CDS 369..2432 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /note="CG12065 gene product from transcript CG12065-RA; CG12065-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_572493.1" /db_xref="FLYBASE:FBpp0071160" /db_xref="GeneID:31798" /db_xref="FLYBASE:FBgn0030052" /translation="MSERRSHIQMAPPPPPPKPNKSQTANGNGIGNGTGIGTGTGNGT LPNGNKNYNKIVAVQDQEPLAQNSSGVQRSQSPPRTEQVVMTPRGKTANSTVILIERK LVDEINDRVHVAGGDHTGIIINKDTVAGQKSASKAAALSLEFRVFLVSANTGKHSQES RTLRFWFRDWLTNEEKQAHIAQDFFKELVSPQDFPRDYVGFIKKIMKLLQHGYSEIQS IEIELRILEETSAPPSRPPRDGYIIYCYGDCNRKFEEALMAQRKTVSLEESQFESPPL TQEKVLELIEQAYPNPVSPEDLAKDYGWSEQDVLLVIKSLQERGLIKSMEYNAYTRIH HEDKEIKVVKQMPTIASNKQPTIAIITAQYCEKLAVDAMLENKETFVRYTTVDSDPNL TNSLRKSKKKRRFGESNVYTLGNIGAHRIVSTKLPSVGSNREAMTATGNTTTRLLGTF QKVDYVFIVGVAGGVPHYTDYKKHVRLGDVVISYVDKQRALISNSKEKPYVYLYKSGE DVKTYFPVNDSLQQIAESLQANMQVKRPWEDYLNQAQQALAQKTDADFNRPDARTDKL FMNIGNNEVIEVAHPIAADEVDGVNRLRLHLGPIGSGRDLVRSDELRTQFARKYGLLA TDVEMSSVLDSIIGNCRESFILVKGIADYKDGTSTRKWQNFAAISAASVVKSVICGMD APTNV" misc_feature 1179..>1337 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /note="Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain [General function prediction only]; Region: COG2512" /db_xref="CDD:442002" misc_feature 1434..2402 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /note="Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB [Nucleotide transport and metabolism, Coenzyme transport and metabolism]; Region: MtnN; COG0775" /db_xref="CDD:440538" ORIGIN 1 tcagttgaaa agcgaacttt gaacaaaacg gactttgaaa agggtttcca tccatcaaca 61 tctatccccg tgttttcatt ttgtttttgc cggcattttg gctagtggaa taaacgaagc 121 aaaccagcaa ggaaaacata aaacaaatta agcaaataat agtgaccgaa aagggagaac 181 cggttgcaaa tcaagtggca aataaaacac gtcatttgtt cgtttgtttg atccagcaac 241 agcaccagca gcagcaagtt tgggctcaag gacgtcgccg gagcagcggt atcgtatcgg 301 atcgaaggag cagcagttcc agcaccaagg aacaggagga gcaaggcgga gcaactagca 361 ccagcaccat gtcggagcgc aggagtcaca tacagatggc gccgccaccg ccgcccccca 421 agccaaacaa atcgcagaca gccaatggaa atggtattgg gaacggcaca ggcataggaa 481 cgggcactgg caacggaacc ctgccgaatg gcaataaaaa ctataacaaa attgtcgcag 541 tccaagacca ggagccgctg gctcagaact cgagcggcgt tcaaaggagc cagtcgccac 601 cacgcacaga acaggttgtg atgacgccac gcggtaaaac ggccaacagt acggtgatcc 661 tcatcgaacg caaactggtc gatgagatca atgatcgcgt tcatgtcgcc ggcggtgatc 721 atacgggcat catcattaac aaggacacgg tcgccggaca gaagagcgcc agcaaggcgg 781 cagcgctatc gctggaattc cgcgtctttc tggtcagcgc caatacgggc aagcattcgc 841 aggagtcgcg caccctgcgc ttctggttcc gcgactggct gaccaacgag gagaagcagg 901 cgcacatagc ccaggacttc ttcaaggagc tggtcagtcc gcaggacttt cccagagact 961 acgtgggctt catcaagaag ataatgaagc tcctgcagca cggatactcg gagatccagt 1021 cgatcgagat tgagctgcgc atcctggagg agacatccgc accaccctcg cgaccacccc 1081 gggatgggta catcatctac tgctacggcg actgcaaccg aaagttcgag gaggcgctga 1141 tggcgcagcg aaagacagtt tcgctcgagg aatcgcagtt cgaatcaccg ccgttgactc 1201 aggagaaggt gctggagctc atcgagcagg catatcccaa tcccgtgtcc cccgaggatc 1261 tggccaagga ttacggctgg agcgagcagg atgtgctgct ggtgatcaag tcactgcagg 1321 agcgcggtct gatcaagtcg atggagtaca atgcgtacac tcgcatccat cacgaggaca 1381 aggagattaa ggtggtcaag cagatgccca cgatcgcctc caacaagcag cccaccattg 1441 ccatcatcac ggcgcaatat tgcgagaagc tcgccgtgga cgcaatgctc gagaacaagg 1501 agacattcgt ccgatacacc acagtcgatt ccgatcccaa tctaacgaac tcactcagaa 1561 agtccaaaaa gaaacgaaga ttcggcgaat cgaatgtgta tactctgggc aatatcgggg 1621 cgcacaggat cgtgagcacc aagctcccgt cggtgggcag caatcgggag gcgatgacgg 1681 cgacgggcaa taccacaacc cgtctgttgg gcacattcca aaaggtcgac tatgttttca 1741 tcgtgggcgt agccggtggc gttccccact acacggacta taagaagcac gtgcgactgg 1801 gcgatgtggt catctcgtat gtggacaaac agcgggcact gatcagcaat agcaaggaga 1861 aaccgtacgt gtacttgtac aagagcggcg aggacgtgaa gacctacttc ccggtgaacg 1921 attcgctgca gcagatcgcc gagagcctgc aggccaacat gcaggtgaag cggccgtggg 1981 aggactacct gaaccaggcc caacaggcgt tggcccagaa gacggatgcc gacttcaacc 2041 ggccggacgc gcggacggac aaactgttta tgaacattgg aaataacgag gtgatcgagg 2101 tggcccatcc cattgccgcc gacgaggtgg acggtgtcaa tcggttgcga ctccatctgg 2161 gtcccattgg atccggaagg gatctggtga ggagcgacga gctgcgcacc cagttcgcca 2221 ggaagtacgg cctactggcc accgatgtgg agatgagcag cgtgctggac agcatcattg 2281 gcaattgcag agagagcttt atactggtga agggcatcgc tgactacaag gacggcacgt 2341 ccaccaggaa gtggcaaaac ttcgctgcca tttcggcggc gtcggtggtt aagtcggtta 2401 tctgcggcat ggacgcgccc acgaatgtat aggaggcggg gcttcgaata ccccatttcc 2461 tccattacac cccaaccccc ccgcccaccc cttccctgca atcgtagcat ttgatttgcc 2521 tccaattttc gtaccaatcc cgctgcggcg tccctttatt tttttgtggc cagacacatg 2581 gggaccacta ttcgtaaacc aaaatgtgca tagattgcat catatataat gtatgttcgc 2641 gtaatattgt attaaatgat ttcttgttat ttattttgtt ataacttttg tactacaatc 2701 aatctaattt acacacaaac acttgacgta tataaaaaca catatataca acagtaaata 2761 aatatcgcaa ctaagcttgc aaaaactaag aat