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LOCUS NM_132247 2521 bp mRNA linear INV 26-DEC-2023 biosynthesis class T (PIG-T), mRNA. ACCESSION NM_132247 VERSION NM_132247.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2521) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2521) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2521) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2521) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2521) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2521) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2521) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2521) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2521) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2521) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2521) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2521) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2521) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2521) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2521) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2521) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2521) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2521) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2521) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2521) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2521) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2521) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2521) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_132247.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2521 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2521 /gene="PIG-T" /locus_tag="Dmel_CG11190" /gene_synonym="CG11190; Dm*AAF46367/27-522; Dmel\CG11190; DmPIG-T; PIGT" /note="Phosphatidylinositol glycan anchor biosynthesis class T" /map="7E6-7E6" /db_xref="FLYBASE:FBgn0030035" /db_xref="GeneID:31772" CDS 295..2196 /gene="PIG-T" /locus_tag="Dmel_CG11190" /gene_synonym="CG11190; Dm*AAF46367/27-522; Dmel\CG11190; DmPIG-T; PIGT" /note="CG11190 gene product from transcript CG11190-RA; CG11190-PA; PIG-T-PA" /codon_start=1 /product="phosphatidylinositol glycan anchor biosynthesis class T" /protein_id="NP_572475.1" /db_xref="FLYBASE:FBpp0071123" /db_xref="GeneID:31772" /db_xref="FLYBASE:FBgn0030035" /translation="MYPVAFVLLLLVAPNADANLGRDDERFHEELVVRPLSGDHVNTY FQFTTRWHYGEKDNLYHTQLTPRVIAELLQQFAVKELHIGLTQGLWRYETWGYPIVEA TSGAEMWAWFSGANLTNRDVDRQWKELANVFSGVLCASLNFVDNTNSIAPRHLIRPQF MPANGQRFVRYATLPREIVCTENLTPWKKLLPCGSASGFASLLNSGHVHNTKYHSLGL KVRVLCEDHDEDNCIVELTQTANLVYDLRLFELSNNDFSLRRLFGMGLNGYCELAESS KIYVQRNELGERYQLVPEPVHEVKTTRGGHSVVYSVYDMHEQFKEAGERLFNVAWLAP KSANRRRNLAKPSLPPVTVHRYLLGHGQERGRIVTEVTNSHYDALPIMLQEVIPWYVH AYLHTLSIRRKPQRVNEYGGQRLTFKLLHYTPGKQRELPSHLEIGFMLPGQTSALISI DVDYLLLKWLEYPPDANHGHYIGSAIVSSQLPMGRNYTALPPEGHLFEHSFNATRPSY VLSLHTEALIVSLPTPDFSMPYNVICLACTVVALAFGPIHSVATKMIIVGRQTSAPKN FVKKIFNQLFRRGKATDETAAEGEGLPAAGAAATGVASGRAAISPGSPSGDQPLLEDL DEEEEEEQD" misc_feature 310..1953 /gene="PIG-T" /locus_tag="Dmel_CG11190" /gene_synonym="CG11190; Dm*AAF46367/27-522; Dmel\CG11190; DmPIG-T; PIGT" /note="Gpi16 subunit, GPI transamidase component; Region: Gpi16; pfam04113" /db_xref="CDD:461180" ORIGIN 1 caagacatct accatctctc taaaaacgaa aacatcaaag atttactaca ccaaattaaa 61 ataaacttat aaatctttgc aaccttaagt ccgtggcaat ttccattttg catttccata 121 tccggctggc caaataattc cacgacattt acggatgtcg cggtaaccta aacacaaaaa 181 aaataaataa atataaataa aataaaataa aatacattaa aacggatcat cagctgtcgt 241 tagaaccgaa acggactaag ggcggaggaa ctggcactga acctatgggc cagcatgtat 301 ccggtggcgt ttgtcttgct gctgctggtt gcacctaatg ccgacgcgaa tttgggacgc 361 gatgacgaac gattccacga ggagctagtg gttcgtccat tgtccggcga ccatgtcaac 421 acctactttc agttcaccac gcgctggcac tacggcgaaa aggataatct ttaccacacc 481 caattgacgc ctcgagtaat tgcggagctg ttgcagcagt ttgcggtaaa ggagctgcac 541 attggcctaa cccagggact gtggcgctac gagacatggg gctatcccat tgtggaggcc 601 accagcggtg ccgagatgtg ggcgtggttc agtggcgcaa atttgaccaa ccgggatgtg 661 gatcgccagt ggaaggagtt ggccaacgtt ttctcgggcg tgttgtgcgc ctcgttgaat 721 ttcgtcgaca atacgaatag cattgcaccg aggcacttga ttcgtccaca atttatgcca 781 gccaatggcc aaagattcgt tcgctatgcc acattgccgc gtgagatcgt gtgcacggag 841 aatctgacgc cgtggaagaa actactgcca tgcggtagtg cctcaggctt tgcctcactt 901 ctcaactcgg gacatgtaca caacaccaaa taccattcgc tgggcctgaa ggtgcgcgtg 961 ctctgcgagg atcacgatga ggacaattgc attgtggagc tgacgcagac ggccaacttg 1021 gtctacgatc tccgtctgtt cgaattgagc aacaatgatt tctcgctgcg ccgcctgttc 1081 ggcatgggac tgaatggcta ttgtgagctg gccgagagct ccaagatcta tgtgcagcgc 1141 aacgagctgg gcgagcgcta tcagctggtt ccagaacccg tgcacgaagt gaagaccact 1201 cgtggtgggc atagtgtcgt ctattccgtc tacgatatgc acgagcagtt caaagaggcc 1261 ggcgaacggc tgtttaatgt cgcctggctg gcgccgaaga gcgcaaatcg tcgtcgcaat 1321 ttggcgaagc catcactgcc accggtgacg gttcatcgtt atctattggg acacggccag 1381 gagcgtggca ggatcgttac ggaggtgacg aactcgcact acgacgccct gcccataatg 1441 ctgcaggagg tgataccgtg gtatgtgcac gcctatttgc acaccctttc catacgtcgc 1501 aagccgcagc gggtcaacga atacggaggc cagcgattga ccttcaagct gctccactat 1561 acgcccggca agcagaggga actgccgtcc catttggaaa ttggcttcat gctgcccggc 1621 cagacatcgg cgctgataag catcgatgtg gattatttgc tgctcaaatg gttggagtat 1681 ccgccggatg cgaatcacgg ccattacatc ggctcggcca ttgtgtccag ccaactgccg 1741 atgggcagaa actataccgc tctgccgccg gaggggcatc tctttgagca ttcgttcaat 1801 gccacacgtc cgagttatgt tctcagtttg cacacggaag cgctgattgt ctcactgccc 1861 acgccggact ttagcatgcc gtacaatgtg atctgtctcg catgcacagt ggttgccctg 1921 gcctttggac ccatacacag tgtggccacc aagatgatca ttgtcggtcg tcagacatcg 1981 gcgccgaaga attttgttaa gaagatcttc aatcagcttt tccggcgcgg caaggccacc 2041 gatgagacag ctgccgaggg cgaaggattg ccagcggcag gagcagcagc aactggagtt 2101 gcatcgggga gagcagcgat atcgccaggc agtccatcgg gcgaccagcc gctgctggaa 2161 gatctcgacg aggaggagga ggaggagcag gactaggagg tgatacaaaa aaacagccat 2221 cgggagtcgt gataagctcc cactgatagt atacccttac aattccaata aagtatattc 2281 acaaggatac caaactgggt tgcaattctc gatttttaag ttatttcaat ttatttcggg 2341 ggttttcaaa aacagtattt tcagttattt tgctaagaaa aatcaaagaa atcgccatgg 2401 gatttctata tatattgtag atgaaatatg tataaacaat gtaagaatga gaattgcaaa 2461 gtatactttt agctttttag aaagctaacc aaatttgtaa cgaaataaac aaagtgaaaa 2521 t