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LOCUS NM_132217 2683 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_132217 VERSION NM_132217.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2683) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2683) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2683) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2683) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2683) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2683) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2683) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2683) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2683) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2683) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2683) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2683) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2683) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2683) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2683) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2683) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2683) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2683) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2683) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2683) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2683) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2683) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2683) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132217.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2683 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2683 /gene="CG10958" /locus_tag="Dmel_CG10958" /gene_synonym="Dmel\CG10958" /map="7D12-7D13" /db_xref="FLYBASE:FBgn0030004" /db_xref="GeneID:31736" CDS 228..2459 /gene="CG10958" /locus_tag="Dmel_CG10958" /gene_synonym="Dmel\CG10958" /note="CG10958 gene product from transcript CG10958-RA; CG10958-PA" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_572445.1" /db_xref="FLYBASE:FBpp0071104" /db_xref="GeneID:31736" /db_xref="FLYBASE:FBgn0030004" /translation="MDDNEDELEEHQELVSDGSVEEEEEVEPDLGPVDSWESFNDRID GLIFNERCDKSVKKLDERRLAILNRVRQQFREAPKGVAERCQAQKSPIDQRLELSSER LNELVRFGKELVTNVRVANERRELNRRLFEGAQKNQMHVKLQRESVETMARFENIKAR WTELEETNEPMLLWDQIEEQKKRIAEIMARKDEMISACQAEVDRMNAKYEFDRERQAQ DLCCLVERVDHQVETLKEAYKEHIQMLRQTIEEERQIFADNAVEKWRTFFDAMNANFD EKANLVRAREQFYARQTQQINESQEELTKSTRIRLEKECERLELELRRTRDNVLMNSE KLDYNYQVLQKRNEENVIINNQQKRRVARLHEAIGRTRRGLKNLYNTGKRNIARLSSD IYKLHSNINDMESKAHQARLNNREKFDRIWEINYKELNLLVDRVYHIDRIIHEQQLAM PWSSPVPPIPNINKAKKKRNNILEKFDMRIGRVPKNRVMPNSGVNCKPDIKELPPDSL RLMRNLIRKLSDRGGFLIEERLLKILEPYSEEEKCLVRIDNIFAALRIRHLRDVKELT KVFMPYTYCPNCQPQGLSPRKCAEVFMKDQKPNRLQGAAGGQPDEKEHRSTGDTFLPK SEVAAKRCHNHYLVMEPALCLHAMNLFTSKMHKKMYEHEPGSILNAVNLIQITDAEIR NFWRQFSACFPASKCKLWKTLEHGLNHYVEVLKMRVQYDAEVVFLRRQNEELRHLLQK FTV" misc_feature 582..887 /gene="CG10958" /locus_tag="Dmel_CG10958" /gene_synonym="Dmel\CG10958" /note="Sperm tail; Region: NYD-SP28; pfam14772" /db_xref="CDD:464307" misc_feature <594..>1499 /gene="CG10958" /locus_tag="Dmel_CG10958" /gene_synonym="Dmel\CG10958" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 2277..2450 /gene="CG10958" /locus_tag="Dmel_CG10958" /gene_synonym="Dmel\CG10958" /note="Sperm tail C-terminal domain; Region: NYD-SP28_assoc; pfam14775" /db_xref="CDD:464309" ORIGIN 1 caccactgac aacagaagta aacaaacgta aagacaacat ttttgtttct accggaaaag 61 taggcgaaat gggcaatgac cacgaaacca agggaacccg ggatccttcg atcaaacttc 121 tccagtcaca caacaaacca ccttgatttg gagcagagtt gccttcagaa attccgcaca 181 acaaagcgat tctcatccaa atctcgacct ggcatatatt ttaaacaatg gacgacaacg 241 aggatgagct ggaggagcac caggagctgg tcagcgacgg cagtgtcgag gaggaggagg 301 aggtggagcc cgatctggga ccagtggaca gttgggagtc ctttaatgac cgcatcgatg 361 gcctgatctt taacgagcga tgcgacaagt cggtgaagaa gttggacgaa cgccggctgg 421 cgatactcaa ccgggtgcgt cagcagttcc gcgaggcccc gaaaggcgtc gccgaacgtt 481 gccaggccca gaagtcgccg attgatcaac ggctggagtt gtccagtgag cgattgaacg 541 aactggtgcg ctttggcaaa gaactagtga ccaatgtccg ggtggccaac gagcgaaggg 601 agctgaatcg ccgactcttc gagggtgcgc agaagaatca gatgcatgtg aagctgcaac 661 gcgaaagcgt tgagacaatg gcccgtttcg agaacattaa ggcgcgctgg acggagctgg 721 aggagaccaa tgagccgatg ctgttgtggg accaaatcga agagcaaaag aaacgcattg 781 ccgagattat ggcacgcaag gatgagatga tatctgcctg ccaagcggag gtggaccgca 841 tgaatgccaa gtacgagttc gatcgcgagc ggcaggccca ggatctttgt tgtctggtgg 901 agcgcgttga tcaccaggtg gagacgctta aggaggccta caaggagcac atccaaatgc 961 tgcggcaaac catcgaggag gagcgtcaaa tcttcgccga taatgcggtg gagaagtggc 1021 gcaccttctt cgatgcgatg aatgccaact ttgacgagaa ggccaatttg gtaagggcac 1081 gcgagcaatt ctatgctcgc caaacccagc agatcaacga gtcccaggag gagctgacca 1141 agagcactcg cattcggctg gagaaggagt gcgagaggct cgagctggag ctacgtcgca 1201 cgcgcgacaa tgtgctgatg aactccgaga agctggacta caactatcag gttctccaga 1261 agcgcaacga ggagaacgtg atcattaaca accagcagaa gcgacgggtg gcccgactgc 1321 atgaggcgat cggacgcacc cggcgtggcc tgaagaatct ttacaacacg ggcaagcgga 1381 acatagcccg tctttcctcg gacatctaca agctgcactc caacatcaac gatatggagt 1441 cgaaggcgca tcaggcgagg ctgaacaatc gcgaaaagtt cgatcgcatc tgggagatca 1501 actacaagga actgaacctg ctggtggatc gggtctacca catcgatcgc atcatacacg 1561 agcagcagtt ggccatgccg tggtccagcc ccgtgccacc cattccaaac atcaacaagg 1621 cgaagaaaaa gcgcaataac attctggaga agtttgacat gcgaattggc cgggttccca 1681 agaacagggt gatgcccaac tcgggcgtaa attgcaagcc ggatatcaag gagcttccgc 1741 cggattcact acgcttgatg cgtaatctta ttcgcaagct gtccgatcgc ggcggtttcc 1801 tcatcgagga gcgtctgcta aagattcttg aaccgtattc cgaggaggaa aaatgcctgg 1861 tacgcatcga caatatattt gcggcgctgc gaattcgtca tctgcgggat gtcaaggaac 1921 tgaccaaggt tttcatgccg tacacctact gtccgaattg ccagccgcag ggattgagtc 1981 cacgcaagtg tgccgaggtg ttcatgaagg atcaaaagcc aaatcggctg cagggcgcgg 2041 cgggtggcca accggatgaa aaggagcata ggtcgacagg ggatacattt ctacccaaga 2101 gcgaggtggc ggccaagaga tgtcacaatc actatctggt catggaaccg gccctctgcc 2161 tgcacgccat gaatctgttc acctccaaga tgcacaaaaa gatgtacgaa cacgaaccgg 2221 gtagcattct caatgcggta aatctcattc agattacaga tgcggagatc cgtaatttct 2281 ggcgccagtt ctcggcctgc ttcccggcct ccaagtgcaa gctgtggaag acactggagc 2341 acggactgaa tcactacgtt gaggtgctca agatgcgtgt gcagtacgat gcggaagtcg 2401 tctttctgcg tcgccaaaac gaagagttgc gccatctgct gcaaaagttc accgtctagg 2461 tgcgatatta ttcaattaca gcctcaaccg caatgcacat acataatccc aagcaattat 2521 tgtccgattt cactgcaaac atgataaatt ataattgtgc ctaggtcttg ctctttgaca 2581 ttgacatcga aatagtttag agacgtgggg tccctgcacg ggcgccatct gaaaaagctt 2641 gtttcattca agagtcgtgc aataaaagta tattttgaac atg