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LOCUS NM_132214 2452 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_132214 VERSION NM_132214.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2452) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2452) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2452) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2452) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2452) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2452) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2452) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2452) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2452) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2452) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2452) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2452) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2452) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2452) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2452) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2452) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2452) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2452) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2452) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2452) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2452) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2452) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2452) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132214.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2452 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2452 /gene="cyr" /locus_tag="Dmel_CG15335" /gene_synonym="CG15335; CG15338; Dmel\CG15335" /note="cypher" /map="7D6-7D14" /db_xref="FLYBASE:FBgn0030001" /db_xref="GeneID:31733" CDS 547..2088 /gene="cyr" /locus_tag="Dmel_CG15335" /gene_synonym="CG15335; CG15338; Dmel\CG15335" /note="CG15335 gene product from transcript CG15335-RB; CG15335-PB; cyr-PB" /codon_start=1 /product="cypher, isoform B" /protein_id="NP_572442.1" /db_xref="FLYBASE:FBpp0071141" /db_xref="GeneID:31733" /db_xref="FLYBASE:FBgn0030001" /translation="MFSSSASAASTSFNLGQLLPLAIAIGVLHLPQFLCHAAWTTRTP ESFINDTTTTTTTTTTTTTKTMQIQAMQVNCSRELLEMHLELSRPFRGLLYAKDFPLE CRARGKDSTRLHLRIPTSGCGVRAEPLEDGSLEYTVRVMLQKEQKLRQSTDILSSVRC QLPANAMGMPLPVLRQEKGHDRNARMRALAAAAAVPALGATSSINQQQRETPRVRIWL ELGGPNGTGSVEVGVATTLTVRAIVPGNIGVRVVDCAALDGLGESTQQLLDARGCPID EQVMPALHTQHRPAEEGWSKQHEEDLVERTFAATFPAFKFPDRERLHVSCGVQLCKGK CPTLNCRLKTPPPALSAEQHLARIEVFNSLAVTAPQIEVDRLRYDRRHNMSGEDYAPH VRGQVMPGEGTLCLSISKLAISFCVLGLIFLVAVVVAIFSLIRSRRRERRHGAGLSLG LGVGLGIAGTSTSNSSSRLHRDRAEICTSMFSSSSESAQSQPRFGAKFLMPYYPNTLP YGRVY" misc_feature 790..1578 /gene="cyr" /locus_tag="Dmel_CG15335" /gene_synonym="CG15335; CG15338; Dmel\CG15335" /note="Zona pellucida (ZP) domain; Region: ZP; smart00241" /db_xref="CDD:214579" ORIGIN 1 agttgtagtt gcttgccatg aaattcaata gaacaagctg ttgcggttgc tcttgtatta 61 ttattttatc gaaatgtcgt ccataaagtt tgcccataaa tgaatgatta gcccggtctg 121 cactttaaac gctggcggtg cgcactttga gccaattgga cgatcccttt cgtggactac 181 cctaaatatg tggtttcata tatatgtagt ataaccattt tcttgtctac cgctcaactt 241 tatcggtttg ccctgataag acacataaga cacaagtgca acaagttcta atcgtttggc 301 ttccagtagt gaaatggtag ctgtgggaga caagattctc gaacttggac tgggagtagg 361 ccaattaaga gttagccacg cggccgcacg aacaggtgtc gtcgcttcca acacagcaac 421 atctagtgac agcagcagca acatccaaag acagcagcaa caagtggcat cattatcgtt 481 ttgcggtttt gatcatcggc ggggcggttt gccgttgcca ctggtagaaa acgggaaatc 541 ggaaacatgt tctcctccag cgcctcggcc gcgtccacat ccttcaatct cggccagctg 601 ctgccattgg ccatcgccat cggagtgttg catctgccgc agtttctgtg tcatgctgcc 661 tggacaacca gaacgccgga aagtttcatt aacgatacga ccaccaccac caccaccacc 721 accaccacca caaccaagac catgcaaatc caggcgatgc aggtgaactg cagccgggag 781 ctgctcgaga tgcatctgga gttgagccgt ccctttcgcg gattactcta cgccaaggac 841 tttccgctgg agtgtcgcgc acgtggcaag gactcgacgc gtctgcatct gcgcatccca 901 acatcgggtt gcggagtgag ggcagagcca ctggaggacg gcagtctgga gtatacggtg 961 cgtgtgatgc tgcaaaagga gcagaagttg cgccagagca ccgacatcct tagctcggtg 1021 agatgccaac ttccggccaa tgcgatgggc atgccacttc cggtgttgcg acaggaaaag 1081 ggtcacgata gaaatgccag gatgcgagcc ttggcagctg ctgctgcagt tccagctctc 1141 ggcgccactt cgtccatcaa tcaacagcag cgggagacgc cacgcgttag gatctggtta 1201 gaattgggcg gtcccaatgg caccggatcc gtggaggtgg gcgtcgccac cacgctgacg 1261 gtgagagcca tcgtgcccgg aaacatcgga gtgcgggtgg tggactgtgc ggcactcgat 1321 ggactgggcg aatccacgca gcaattactc gatgcccgcg gctgtcccat cgacgagcag 1381 gtaatgcccg ctctgcacac ccagcaccga ccggcggagg agggttggtc caagcagcac 1441 gaggaagacc tggtcgagcg gacgttcgcg gccacgtttc ccgccttcaa gttcccggac 1501 cgcgagcgcc tacacgtcag ctgtggcgtg caactttgca aggggaagtg tccgactcta 1561 aattgtcgcc taaagacgcc tccgccggcg ttgagcgccg agcagcatct ggcacgcatc 1621 gaggttttca attcgctggc cgtgacagca ccccaaatcg aggtggaccg cctgcgctac 1681 gataggcggc acaacatgag cggcgaggat tatgcgccgc atgtgagggg tcaagtgatg 1741 cccggcgagg gaacgctctg tctgtccatc tccaagctgg ccatctcgtt ctgcgttctg 1801 ggcctgatct ttctggtggc cgtggtggtg gccatctttt cgctgattcg atcgcgtcgc 1861 cgggagcgtc gtcatggagc tggcttgagt ctgggtctgg gagtaggact gggcatcgcc 1921 gggacgagca cgtcgaacag cagcagtcga ttgcatcggg atcgggccga gatttgcacc 1981 tcgatgttct catccagcag cgaatcggcg caatcgcagc cgcgtttcgg ggccaagttc 2041 ctgatgccct actatccgaa taccctgccc tatggccgtg tctactaatt gattgcgtgg 2101 cggagttatt tagtggaggc gcctcccaga gactgacgga atcgtctaac gagtggtaca 2161 ccaaaataag gtctaacttt agcaatatta tgcgtagttc tgtaactttt cggttggttg 2221 gaaaggatct tgaaagcgtt ttgcaagcgg tttggggcca aaatgcgttt tgatatcctt 2281 tcgctgtagc tgtatgtaat atctacatag atctaagagt aaaaacctaa catagttgca 2341 tccaaatcaa acttaaggaa ctttgagtct ttaaaggtat tttttatata ttttgtttac 2401 cttttttatt tcctgaacaa gttttaattt ggaataaaca tacttctaat at