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LOCUS NM_132163 3487 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_132163 VERSION NM_132163.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3487) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3487) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3487) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3487) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3487) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3487) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3487) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3487) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3487) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3487) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3487) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3487) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3487) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3487) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3487) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3487) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3487) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3487) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3487) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3487) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3487) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3487) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3487) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132163.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3487 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3487 /gene="Dok" /locus_tag="Dmel_CG2079" /gene_synonym="CG2079; Ddok; Dmel\CG2079; dok; l(1)G0331" /note="Downstream of kinase" /map="7B1-7B1" /db_xref="FLYBASE:FBgn0029944" /db_xref="GeneID:31667" CDS 376..2244 /gene="Dok" /locus_tag="Dmel_CG2079" /gene_synonym="CG2079; Ddok; Dmel\CG2079; dok; l(1)G0331" /note="CG2079 gene product from transcript CG2079-RA; CG2079-PA; Dok-PA; lethal (1) G0331" /codon_start=1 /product="downstream of kinase" /protein_id="NP_572391.1" /db_xref="FLYBASE:FBpp0071008" /db_xref="GeneID:31667" /db_xref="FLYBASE:FBgn0029944" /translation="MDVEIPVLAGYLNVPTQTGFSLNRISKKKACSRYCLLFKASRHG IARLEMCESKEDRNPKIFTLENCVKITQEPPPERLIHIVKRQATLTLSTSSEEELKDW ITALQTVAFCDTSPSGGIGAIEEDNDLYCSSFDGLFIITLIPSEASIRCCIEPKTYML QMTPTELQLKSEDLGATIAMWPYRFIRKYGYRDGKFTFEAGRKCTTGEGVFTLDHTNP QEVFRCMSAKMKSMKKLISGDSLSTLECGENQFSAAAGMEPGSRSPLPPSPSSNPHGG EFEINSTQSCISLRGFISSNDSLNNFSAGGGGASGATATGGGVLGSTGGITLSVPANS NSNSSSSKHIPNKPPRKSPTTHCDKYRNIVKYEPVAITTISSPSANSDVNSSVILKPL EGESISLPETAADLPPDLPLRNESASKAPPPERDYECIENITEAWRTRGVGDVRHSER MPILCDTSEFVRQRSVSKSTCGSQNTPKIIDIDIGEGCTSATSISESNYDRLDFLSPN NKTSSGYKTIVNVTPGNRIRCSPPPPNEYELIASPDTESFRKADDSHRGYGVLRKAST TTNNNNLGISNSNISGGSSTITTATANKGGNLEAAAIDHRSYNGLNYTMVSKPKRV" misc_feature 391..696 /gene="Dok" /locus_tag="Dmel_CG2079" /gene_synonym="CG2079; Ddok; Dmel\CG2079; dok; l(1)G0331" /note="PH domain; Region: PH; pfam00169" /db_xref="CDD:459697" misc_feature 787..1074 /gene="Dok" /locus_tag="Dmel_CG2079" /gene_synonym="CG2079; Ddok; Dmel\CG2079; dok; l(1)G0331" /note="PTB domain (IRS-1 type); Region: IRS; pfam02174" /db_xref="CDD:460473" ORIGIN 1 tgcatgcaac cgtgcagcgc ataaataaat aaagtcgact tgcctctgtg ctcgcttttt 61 ggtgattttt ttttgtgctg cggctgcgct tttcgaaatt cgaatctccg tattcgctgt 121 gcgatatgat gtgatgttta ctatgaagtg atcaactaaa tgcgaccgcg aagctatcgt 181 aaagcacaga aaaacggatg aattgaagga aaactccaga aatcgcatag cccaactcca 241 gcaacaacaa caacaacaac aattcggaat cggaggcgca ttgtgtgagc tagatcggcg 301 aaggagaggg aaagagagca ggagacgaag gagagtggga agaaggagag gagaggtgga 361 ggagtggtgc acagaatgga tgttgaaata cctgttttgg ctggatatct taatgtgccg 421 acccaaactg gattttcgct aaatcgcatc tcgaaaaaga aagcatgcag tcgctactgt 481 ttgctattca aggccagtcg gcatgggatt gcccgcctgg agatgtgcga aagcaaggag 541 gaccggaacc ccaaaatctt caccctcgaa aactgtgtga agatcactca ggagccgcct 601 cccgaacgcc tcattcacat tgtcaagcgg caggctaccc taacactgag cacaagtagc 661 gaggaggagc tcaaggattg gatcaccgcc ctgcaaacgg tggccttctg tgacacctca 721 ccatcggggg gaatcggggc catcgaggag gacaacgacc tctactgcag ctcctttgat 781 ggcttgttca ttatcacgtt gattccatcc gaggcctcca ttcgttgctg cattgaacct 841 aagacatata tgctccaaat gacgcccact gaacttcagt tgaaatcgga ggatttgggc 901 gccacaatcg ccatgtggcc atatcgtttc attaggaagt acggctatcg cgatggcaag 961 ttcacctttg aggcgggcag aaaatgcacc accggcgaag gcgttttcac cctggatcac 1021 accaatccac aggaggtatt ccgctgcatg tccgccaaga tgaagtcgat gaagaaactg 1081 attagcggcg atagtctgag caccttggag tgcggtgaga atcagtttag tgcggcagct 1141 ggcatggagc ccggttcgcg aagcccactg ccaccatcac cgtcgagtaa tccccacggt 1201 ggcgagttcg agatcaactc aacgcaaagc tgcatatccc tgaggggctt cattagctct 1261 aacgattctc ttaataactt ctcggcgggt ggaggtggag caagtggcgc cacagcaacg 1321 ggtggaggcg ttttaggaag taccggagga atcacgctat ccgtgcccgc aaatagcaat 1381 agcaacagca gcagcagcaa acacattccc aacaaaccgc cacgcaaaag cccgacaacc 1441 cattgtgata aatacaggaa tattgtgaaa tatgaacctg tggccataac tacgatatct 1501 tcgccatccg ccaattccga tgtgaacagt tcagtgatac tgaaacccct ggaaggcgaa 1561 tcgatatccc tgccggaaac agcagccgat ttaccgcccg acttgccgct gcgaaatgag 1621 agcgcctcga aagcaccgcc tccggagcgg gattacgagt gcatcgaaaa tatcacagag 1681 gcgtggcgca caaggggcgt gggcgatgtt aggcacagtg aacgtatgcc catactctgc 1741 gatacctcag aatttgtacg ccagcgatca gtatcgaaat ccacctgtgg cagccaaaat 1801 acacccaaga tcatagacat cgatatcggt gagggttgca ctagcgccac atccattagt 1861 gaatcgaatt acgatcgttt agactttcta tcgccgaaca ataagacatc gagtggctat 1921 aagaccattg tgaatgtcac acccggtaat cgcatacgat gcagtccacc gccacccaat 1981 gaatacgaat tgatcgctag tcccgatacg gaaagcttcc gtaaagccga tgacagtcat 2041 cgcggttacg gggtgctgcg aaaggctagc accactacga acaataataa tctaggaatc 2101 tccaatagca atatcagcgg cggtagtagc accatcacaa ctgcaacggc caacaaaggc 2161 ggcaatctcg aggcggcagc catcgatcat cgcagctata atggcctcaa ctacacaatg 2221 gtcagcaaac cgaagcgagt gtaaaatatt taaggatttc agatccgata gcaaggatcc 2281 agagatcctg gcatcgaact gggtgcagtg gggttttggg gtggatcggg aggagatagt 2341 cctagttttt atttgtccca gaactgttgc tgttttcaat ttaattcaac acaacttgtt 2401 gacatgttaa tttggatttt cccagtagtc aaattcatga ctatttcgtt attggacgac 2461 gccagatgaa taagcttgtg tgcttttcgc gatacatttt aagtgttgcg ataacaaatg 2521 taaatgtatg ttcaaaaaaa tttaaaaaac aaaattgaaa acagtaacgt gccagtaact 2581 ttttacataa tttcatacat tttgagtata agtgaaaaag aagagactgc cgagtgcctt 2641 acagttctac aaaaagaaag aaattcctgg ctggaaatcg agggaaggaa gtgcgtcgaa 2701 tctctaaatc ccagaatttg tccttccctt tgccaagcca aaaacaaata ccattcgaat 2761 cgttcaattt tttttttttt tgtaattgtt tttcgttaat tatgttaaat tcgtaatctg 2821 tgattgtatt gttaattgtg aaactgttac atttttagca agcactgccc gccacttgat 2881 gatcgcactc gaaaaattcc cccggctctt acttaaaatg tagtgttaaa ttaaagcaag 2941 agaaaaatga aactcaatcg aatcatggac gtaacgaaaa tttacaaaat gtgtatgcga 3001 tttatgctaa atatatgtgt ttttgtatat ttaaaggaac tagattttaa atacactgca 3061 attgtacttg tttccgttta tccgtccgtc ttctcaaggt tttgatgcca tataaatcgg 3121 ttattcgaat tgttattcct atacgttttt gtatgataga tcatatagct gccataggaa 3181 caaacggtgt aatgccatta tctcaaaaat cacccaaaat agttgactct tatttttttt 3241 ttttttgctc aatcttagac tgtaaatata caataggttt cttaagtgtt gttttcgatt 3301 gcacctcctc tcaataaccc aaataagaaa cccgccccat cgttacccca tgcacgttcg 3361 agttctcaag ccaggattgt tgtaaacgac agttttgagt attatgcaaa ggtcacaaaa 3421 aaaaaaaaaa aaaatttata taaattaaaa cgaacaaacg aaggcgaaca caaataagaa 3481 aaatacc