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LOCUS NM_132126 2522 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_132126 VERSION NM_132126.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2522) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2522) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2522) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2522) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2522) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2522) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2522) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2522) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2522) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2522) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2522) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2522) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2522) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2522) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2522) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2522) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2522) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2522) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2522) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2522) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2522) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2522) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2522) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132126.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2522 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2522 /gene="Nf-YC" /locus_tag="Dmel_CG3075" /gene_synonym="CG3075; Dmel\CG3075; dNF-YC; nf-yc; Nf-yc; NF-YC; NFYC" /note="Nuclear factor Y-box C" /map="6D3-6D3" /db_xref="FLYBASE:FBgn0029905" /db_xref="GeneID:31622" CDS 194..1999 /gene="Nf-YC" /locus_tag="Dmel_CG3075" /gene_synonym="CG3075; Dmel\CG3075; dNF-YC; nf-yc; Nf-yc; NF-YC; NFYC" /note="CG3075 gene product from transcript CG3075-RA; CG3075-PA; Nf-YC-PA; NF-YC-like" /codon_start=1 /product="nuclear factor Y-box C" /protein_id="NP_572354.1" /db_xref="FLYBASE:FBpp0070935" /db_xref="GeneID:31622" /db_xref="FLYBASE:FBgn0029905" /translation="MYATNNGGTNKAPNSNATSMFDNTITVTPIKMELGQAYAKSQNS AAMQRRTPNAVVVTSSSTVSSAQQQQQQQGQQQQQTVPMASLVSNACTLVNPSMSVTV ATTVASGAKEKTTKATRTQVARKPPPTIDNFWPNIVSEVHSIGQVDAKHQVLPLARIK KIMKLDENAKMIAGEAPLLFAKACEYFIQELTMHAWVHTEESRRRTLQRSDIAQAIAN YDQFDFLIDIVPREEIKPSSAQKTKDGSTSSSSGMAGAASSAASTSNTATSNAAASVA GNATATGNFVASGSTVPATTAGGLKLDTTGATNAAEVLGFSTVNSDIFSAQLQQQQQQ QQQHAAQQQQQQQQQQHHQAHPQQVQIIQQGAGGQQLQYFIALPSQQAAQLVQQPQPA QNHLPINILSTQQPTQQLILTAGPNGQLTATPAPQTTAQQQTALLQNLAQQQQQHQQH QQQIQLLQQVVTPTGELTNVPIAINASHLNLLQRLQMQQQQQQQQQQQQQQQQQQQVI IPTQLLTTQQLLQLGGAPTVAHQQQQQQQQHANLTQQSNASAVASGTPIFINSTMTGA QAAATQAQQQQSAQQQQAQTISTMSTDRTLTGGFR" misc_feature 635..883 /gene="Nf-YC" /locus_tag="Dmel_CG3075" /gene_synonym="CG3075; Dmel\CG3075; dNF-YC; nf-yc; Nf-yc; NF-YC; NFYC" /note="histone-fold domain found in nuclear transcription factor Y subunit gamma (NF-YC) and similar proteins; Region: HFD_NFYC-like; cd22908" /db_xref="CDD:467033" misc_feature order(653..658,665..670,677..682,686..691,698..700, 704..712,716..721,725..733,737..760,764..772,779..781, 806..820,827..829,854..856,863..868,875..880) /gene="Nf-YC" /locus_tag="Dmel_CG3075" /gene_synonym="CG3075; Dmel\CG3075; dNF-YC; nf-yc; Nf-yc; NF-YC; NFYC" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:467033" misc_feature order(653..667,671..673,683..685,704..715,803..811, 815..817) /gene="Nf-YC" /locus_tag="Dmel_CG3075" /gene_synonym="CG3075; Dmel\CG3075; dNF-YC; nf-yc; Nf-yc; NF-YC; NFYC" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:467033" misc_feature order(686..688,692..694,851..856,860..865,872..877) /gene="Nf-YC" /locus_tag="Dmel_CG3075" /gene_synonym="CG3075; Dmel\CG3075; dNF-YC; nf-yc; Nf-yc; NF-YC; NFYC" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:467033" ORIGIN 1 gtccagtttt cgccctcacc gccgcctggt cacactgacg ctcgcgtgta tgcatgtgtg 61 tgtgtgtgca ttacattacg catttgcttt gcgaattaga agctaattaa agcgaatatt 121 gtggactcga gccggtcgcc agagtcccac ggttgccgcc aacgccgagc taaggtctcc 181 agccaaccgg gccatgtacg ccaccaacaa tggcggcacg aacaaggcgc caaacagcaa 241 tgccacctcc atgttcgaca acaccatcac agtgacgccc ataaagatgg aactgggcca 301 ggcgtatgcc aaatcgcaaa attcagcggc tatgcagcga agaacaccga atgcagtggt 361 ggtcacctcc tcctccaccg tctcctccgc ccagcagcag cagcaacagc agggccagca 421 gcaacagcag acggttccca tggccagttt ggtgtccaac gcctgtacgc tggttaatcc 481 cagcatgagt gtgacggtgg ccaccaccgt tgcgagcggc gccaaggaga agaccacgaa 541 ggccacacga actcaggtgg cacgcaaacc gccgcccacc atcgacaact tctggccaaa 601 tatcgtgagc gaggtgcaca gcatcggcca ggtggatgcc aagcaccagg tgctgccgct 661 ggcgcgcatc aagaaaatca tgaagctgga cgagaacgcc aagatgattg ccggcgaggc 721 gccgctactg tttgccaaag cctgcgagta cttcattcag gagctgacta tgcacgcttg 781 ggtgcacacc gaggagagcc ggcggcgtac gctccagcgt tcggacattg cccaggccat 841 agccaactac gaccagttcg acttcctcat cgacattgtg ccgcgcgaag agatcaaacc 901 gtcgtcggcg caaaagacca aggatggcag tacatccagt tcgagcggaa tggcgggcgc 961 agccagcagt gccgcctcca cctccaacac agccacctcc aatgcggccg cctccgtggc 1021 gggcaatgct accgccacgg gcaactttgt agccagtggt tccaccgtac ctgcgaccac 1081 cgctggtggc ctcaagctgg acaccacggg tgcaaccaat gccgccgagg tgctcggctt 1141 cagcactgtc aactcggaca tcttctcagc gcaactgcag cagcaacaac aacagcagca 1201 acagcacgcc gcccagcagc agcagcaaca acagcagcag caacatcacc aggcacatcc 1261 acagcaggtt cagattattc agcagggcgc tggtggccaa cagttgcaat actttatcgc 1321 actgccgagt cagcaggcgg cgcagctcgt gcagcagccg cagcccgcgc agaatcatct 1381 acccatcaac attttgtcaa cccaacaacc cacccagcag ttgatactga ccgccggtcc 1441 caatggtcag ctgaccgcaa cgccagcgcc gcaaacgact gcccagcaac agacggcgct 1501 gctccagaat ctcgcccagc agcaacagca gcaccagcaa catcagcagc agattcagct 1561 gctgcagcaa gtggttacgc ccacggggga gctgactaat gtgccgatcg ccatcaatgc 1621 cagtcatttg aatctcctgc agcgactaca aatgcaacag cagcagcagc agcaacaaca 1681 gcagcagcaa cagcagcagc agcaacaaca ggtcatcata ccaacccaac tgctgacgac 1741 acagcaactg ctccagctgg gcggagcacc cacagtggcc catcagcagc agcagcaaca 1801 gcagcagcac gccaatctca cgcagcagag caacgccagt gcggtggcca gtggcacgcc 1861 gatctttatc aactcgacca tgactggtgc ccaggcggcg gcgacgcagg cgcagcagca 1921 gcagtcggcg cagcagcaac aggcacaaac gatctccacc atgtccacgg atcgcacatt 1981 aaccggcgga tttcggtaaa agctggaagt atgatatccg taccaacgga cggacggaca 2041 gacggacagt tggcaatcat atcgaaagca tcgggaggca ttggaatcgg gcattggcaa 2101 gcgggcattg attgcgccat cccctgtcat ccagcacaat gtataatatt atagtttacg 2161 taggtgtata cgattgtata tcgcggggga gattatatat agctagtgtc taagtcgtag 2221 gcatctgtgt agaaacgatt tctcaattgt aatttattgc tgaccctccc gccccctggc 2281 agcaggtttc accttctcca aaaaaaaaaa ccgccacctc caccactttt aaacctagca 2341 cttagagaga ataatgggaa atcgagtgta ttagtgtatg tatgtgacgg gtgacggatg 2401 ccaccggtcc aaagcataac ccagcgtttc gcgtggcatc cgcgctcttt attatgtatt 2461 tgtacttcta actaagctaa gatctgataa acaattataa gccaccaagg actatgtgcc 2521 ag