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LOCUS NM_132117 3291 bp mRNA linear INV 26-DEC-2023 A (CG3168), mRNA. ACCESSION NM_132117 VERSION NM_132117.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3291) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3291) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3291) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3291) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3291) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3291) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3291) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3291) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3291) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3291) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3291) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3291) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3291) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3291) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3291) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3291) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3291) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3291) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3291) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3291) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3291) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3291) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3291) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Dec 17, 2009 this sequence version replaced NM_132117.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3291 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3291 /gene="CG3168" /locus_tag="Dmel_CG3168" /gene_synonym="BEST:LP06294; Dmel\CG3168; LP06294.5prime; Slc22a18" /map="6C9-6C10" /db_xref="FLYBASE:FBgn0029896" /db_xref="GeneID:31612" CDS 316..2214 /gene="CG3168" /locus_tag="Dmel_CG3168" /gene_synonym="BEST:LP06294; Dmel\CG3168; LP06294.5prime; Slc22a18" /note="CG3168 gene product from transcript CG3168-RA; CG3168-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_572345.1" /db_xref="FLYBASE:FBpp0070945" /db_xref="GeneID:31612" /db_xref="FLYBASE:FBgn0029896" /translation="MVEGDSAKGKSEFYNVEAGLQPNYNQSAASNQASNHPTGQANAP ATGNATSHIDNRAIIQPYSLGTGPKQPEYQFAADNRGYEPDSHANGKQQDVERDAPDG GHGGHGPPGKGGKGGKGRKKSVPLPEPTAPIVANFERAIELCGYGKFHYILLAICGLV STSEEMDVISMSFILPSAECDLDLNTETKGWLNSIIFIGMMVGAYFWGSIADSFGRKK VLIVISFMNAFCIVASSFSQTYSFFMLFRFLNGAALGGSGPVIWSYFAEFQPKAKRGS MLSFMAAFWTFGNLFVASLAWLIIPRTIGFTTPYFTYNSWRIFLLVCSLPSFLVGFLL FYLPESPKFLLTRGKKDRALAIFRGIFVTNTKRRPDEYMVYDLEVDEKLLESNGNVKN KYSRMISGMVDHSRALFKSPILRFTIVSITINFTFHIGYYGLLMWFPELFNRFEEYEK AFPDQSAGVCAVTDYVVNLAKEQSNNGTCSSDIPQSVFMESLISLASALPANLLAILG MDMLGRKFFLIAGTMTAGICSALMYFVRSSVQNLVVSAIFSGAISAANAALDCLITEV FPTKLRATGVAISMVAARLGGIIGNIVIAQLLDNYCPSPTFIVSGLLIGGGLMCLLLP NTTRKELN" misc_feature <724..2193 /gene="CG3168" /locus_tag="Dmel_CG3168" /gene_synonym="BEST:LP06294; Dmel\CG3168; LP06294.5prime; Slc22a18" /note="synaptic vesicle protein SV2; Region: synapt_SV2; TIGR01299" /db_xref="CDD:130366" ORIGIN 1 gaacgcattg tccaatcgct cttggagccg cgtggagctc ctccaaccag tgatcgtgat 61 ctatatagcc cggattcttc aattcgtcta ctaaccgccg tgcatcggat ctcttttcga 121 aaccacacac acacacacag caattagtcg acatcgtcga caaggacagc agtagtagac 181 cgctaagcga ggcagacaca actgtaccca tctaagcaga gcttagagca aaaagccaac 241 aaaaaacccc gacaagtaaa cccaatttcc tttttgctac gcgcacaaga agccaacaaa 301 accctgaact atagaatggt agaaggtgat tccgcaaagg gcaaaagcga attctataat 361 gtagaagctg gactacaacc gaactacaac cagagcgcag caagcaacca agcaagcaac 421 catcccactg gccaggccaa cgcaccagcc accggaaacg cgacttcgca catcgacaac 481 cgagcgatca tccagccgta ctccttgggc accggaccca agcagccgga gtatcaattt 541 gcggcggaca atcgcggcta cgagccggac agccatgcca atggcaagca gcaggacgta 601 gagcgggacg cccccgatgg gggtcacggg ggtcacgggc cgcccggcaa ggggggcaag 661 ggtggtaagg gacgcaagaa gtccgtaccc ttgccggaac ccactgcccc aatagtcgcc 721 aatttcgaga gggccatcga attgtgcggc tatggcaagt tccattatat actgctggcc 781 atctgcggat tggtcagcac gtccgaggaa atggatgtca tatccatgtc cttcattctg 841 ccatcggcgg agtgtgacct ggatttgaat acggagacca agggctggct gaactcgatc 901 atcttcatcg gcatgatggt gggcgcttac ttctggggca gcatcgccga tagctttggc 961 cgcaagaagg tcctcatcgt catctcgttc atgaacgcct tctgcatcgt tgcgtcgtcc 1021 ttctcgcaga catactcgtt cttcatgctg ttccgcttcc tcaatggtgc agctttgggc 1081 ggcagtggtc ctgtgatctg gtcgtacttc gccgaattcc agcccaaggc gaagcgcggc 1141 tccatgctga gcttcatggc cgccttctgg acgtttggca atctgttcgt ggccagcttg 1201 gcctggctga tcatcccgcg aacgattggc ttcaccacgc cgtacttcac atacaactcg 1261 tggcgtatct ttctgctggt ctgctcactg ccctcgttcc tcgtgggatt ccttctcttc 1321 tatctgcccg aatcgcccaa gtttctgctg acgcgcggca agaaggatcg cgctctggcc 1381 attttccgtg gcattttcgt aacgaacacg aaacgccgtc cggacgagta catggtctac 1441 gacctggaag tggacgagaa gctgctggag agcaatggca atgtgaagaa caaatatagc 1501 cgcatgatca gcggaatggt tgaccacagt cgcgccctgt tcaagtcgcc catactgcgt 1561 ttcactatcg tttcgattac gatcaacttt acattccaca ttggctacta tggcctgttg 1621 atgtggttcc cggagctctt caatcgcttc gaggagtacg agaaggcatt cccagatcag 1681 tcggccggcg tttgtgctgt cacagactat gtggtcaacc tggccaagga gcaaagcaac 1741 aatggtacct gctcatcgga tataccgcaa tcggtgttca tggaatcgct gatatcacta 1801 gcctcagcgc tgccggccaa tctgctggcc attctgggca tggacatgct gggcaggaag 1861 ttcttcctaa tcgccggtac catgaccgcc ggcatctgct cggcgttgat gtactttgtg 1921 cgcagctccg ttcagaacct ggtcgtatcg gccattttca gtggtgccat ttcggcggcc 1981 aatgcagcgc tcgactgcct catcaccgaa gtattcccca ccaagctgag agccaccggc 2041 gtggccattt caatggtggc cgctcgcttg ggcggcatca ttggcaacat cgtgattgcc 2101 cagctgctgg acaactactg tccatcgccc acgttcatcg tgtcgggtct gctcatcggc 2161 ggcggtctca tgtgcctcct gttgcccaat acgacgcgca aggaactcaa ttaagcagct 2221 aatcaattcc caacgatagc caaccagcca aaaaaaaaac accccataga atcttctgct 2281 ttaactgcta gtctgcaagg tcttgtttcg agtcatgata ctatggttta taatggatca 2341 tagatattaa cttcaggtca agaccttttt gggctagata agttcccctt tgaacaatca 2401 acaatagtta acacaccgcc caaaaaacca cccgcgaccc acaagtaatt tccatttgcc 2461 ccattccgcc agaggatcgg gcattatctg tgtatatatg gtatgtgtgt gctacaatac 2521 acgattattt gtatcgtcag taattattta acgatagcga taacgatttt cattgtgtgt 2581 ctaattttaa acgacccttt acccccttta ctcccccttt ccctacccac tacaaatatc 2641 tatcaatcta ttggaattta aatgaaccaa caaaatgaaa tcagaaatgg gcgaaagaaa 2701 agtcacaacg agaacaaacc ttatcacaag gaaaataaga aaatttggaa actaatacat 2761 acaaccattt tggaatgcgg attggcattc tttcgcccaa ttatgataag caaagaaaac 2821 cccaagccag cgagaagata tagcaggtag gatcgatagc aatcgatgta tatgtattgt 2881 attgtacgat atgtagagaa taatatatat atatttggca agcgccggcg ccggctgaag 2941 cagcagcaga gggactgagt aacggtaacg gtaaagataa ggggctaagc gccggataat 3001 caaatggaat caaagatact atcgcaccgt tctcgttccg ctgctgtccg ttattgttgt 3061 tattattgct attattatta atgcattcaa tgtaaaacac atacgtatat aactttatct 3121 atatattaaa catacatact atatcaaaaa gatatttttt ttttgttttt ttttcgtcat 3181 gtaggaccaa agcacaggaa gtgaaagaat atttttaaaa tttagttacg ttataacaag 3241 ttacgctaca tatatacaaa acaaaaaccc taataaaaaa ggacaaacca c