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LOCUS NM_132070 1907 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_132070 VERSION NM_132070.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1907) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1907) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1907) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1907) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1907) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1907) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1907) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1907) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1907) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1907) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1907) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1907) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1907) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1907) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1907) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1907) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1907) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1907) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1907) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1907) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1907) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1907) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1907) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132070.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1907 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1907 /gene="Btnd" /locus_tag="Dmel_CG3599" /gene_synonym="Btd; BTD; CG3599; CT12113; Dmel\CG3599" /note="Biotinidase" /map="5E1-5E1" /db_xref="FLYBASE:FBgn0029848" /db_xref="GeneID:31552" CDS 34..1695 /gene="Btnd" /locus_tag="Dmel_CG3599" /gene_synonym="Btd; BTD; CG3599; CT12113; Dmel\CG3599" /EC_number="3.5.1.-" /EC_number="3.5.1.12" /note="CG3599 gene product from transcript CG3599-RA; CG3599-PA; Btnd-PA" /codon_start=1 /product="biotinidase" /protein_id="NP_572298.1" /db_xref="FLYBASE:FBpp0070843" /db_xref="GeneID:31552" /db_xref="FLYBASE:FBgn0029848" /translation="MKSIQLSFLLLSVLFSSSHQLSKPEDPTYTAAVVEHSQPVGDSP RARTTSASESFQKIIREVGDVDIIVFPEHILNSQATATFVPHESQNITPCYQTDYELF LIELSCSARANHLYVVINVVEKELCAHGAGSDTYNPCPSSGVRYFNTNVVFDRRGRIV SRYRKTHLWRHEYVSTSVLRSPDISIFRTDFGVTFGHFICFDMLFYDPAMKLVKEHKI TDIVYPTYWFSELPFLGAVQLQEGWAFGNDVNVLAADASNPDGRTSGSGIYAGRGGRL VAEIFEQPTTKLLIAEVPKREHGQLAPTFTPIFEPQRKTQRLTGLATYRDNNVDIFES ELLDDDFLSFERQLCHGSFCCTFSIERKVTSAAENELPSSGAKSYRYRIGVYWGNETT VIGVDRTEQATCALFACTDVRLASCGYIYPENEEVINTHHFTKLSISGNFPAAPRGRR LIMPSSLNALFLPVSVSDYEWIESPEAANNLDKTILVDLKLAKAQNDLLTFAIWANYY TDIPSTHNLDHMQPNGTQSNPSTSASSTVSAFWILCVLNCFISVL" misc_feature 118..957 /gene="Btnd" /locus_tag="Dmel_CG3599" /gene_synonym="Btd; BTD; CG3599; CT12113; Dmel\CG3599" /note="biotinidase and vanins (class 4 nitrilases); Region: biotinidase_like; cd07567" /db_xref="CDD:143591" misc_feature order(247..249,526..528,538..540,547..549,631..636, 640..645,709..711) /gene="Btnd" /locus_tag="Dmel_CG3599" /gene_synonym="Btd; BTD; CG3599; CT12113; Dmel\CG3599" /note="putative active site [active]" /db_xref="CDD:143591" misc_feature order(247..249,526..528,631..633) /gene="Btnd" /locus_tag="Dmel_CG3599" /gene_synonym="Btd; BTD; CG3599; CT12113; Dmel\CG3599" /note="catalytic triad [active]" /db_xref="CDD:143591" misc_feature order(529..540,544..546,568..576,634..636,640..654, 661..666,727..732,736..744,748..753,823..828) /gene="Btnd" /locus_tag="Dmel_CG3599" /gene_synonym="Btd; BTD; CG3599; CT12113; Dmel\CG3599" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:143591" misc_feature 1006..1566 /gene="Btnd" /locus_tag="Dmel_CG3599" /gene_synonym="Btd; BTD; CG3599; CT12113; Dmel\CG3599" /note="Vanin C-terminal domain; Region: Vanin_C; pfam19018" /db_xref="CDD:465946" ORIGIN 1 ttttggcatt tggatttcgg ccgacgttcc attatgaagt cgattcaatt gagttttcta 61 ctcttgtcag tgctcttcag cagttcgcat cagctttcca agccggaaga tccaacctat 121 acggcagcag tggtggagca cagccagcca gtgggcgatt ctccgcgtgc acgcaccacc 181 tcagcttcgg aatcctttca aaagatcatc cgtgaagtcg gcgatgtgga catcatagtg 241 tttcccgagc acatactcaa tagtcaggcc acagccactt ttgtgcccca tgagtcgcag 301 aacataacgc cctgctacca aacggactat gagctcttcc tcatcgagct atcctgctcg 361 gcgagggcta accacctgta tgtggtcata aacgtggtgg agaaggaact gtgtgcccat 421 ggagctggtt ctgacaccta caatccttgt ccatcgtctg gcgttcggta cttcaacaca 481 aatgtcgtgt tcgatcgaag gggcaggatt gtctcgcgtt acagaaaaac ccatttgtgg 541 cgacacgagt atgtctcgac atcagtgctc cgatctccgg atatatccat ctttaggaca 601 gactttggcg taacctttgg tcatttcatc tgcttcgaca tgttgttcta tgatccggcg 661 atgaaattgg tgaaggagca caagatcacg gacatcgtgt atccaaccta ttggttctcg 721 gaattgccat tccttggcgc tgtacaactc caagagggtt gggcatttgg taatgatgtt 781 aatgttctag ccgcagatgc cagtaatccc gatggacgca cttccggatc gggtatctat 841 gcaggacgcg gtggccgatt ggtggcggag attttcgagc agcccaccac taagttgctg 901 attgcggagg tgccgaagag ggaacatggc caactggcac ccacttttac gccgatcttc 961 gagccgcaga ggaaaacgca aagattgact ggcctggcca cgtaccggga taataatgtg 1021 gatatattcg aaagtgaatt gttggacgat gattttctga gtttcgaacg ccagttgtgc 1081 catggcagct tttgctgtac cttctccatc gaacgaaagg tcaccagtgc cgcggagaac 1141 gagttgccct ccagtggggc caagtcatat cgctatagga tcggcgtcta ctggggcaac 1201 gagaccaccg tcattggcgt ggatcgcacg gagcaggcaa cttgtgcact ctttgcctgc 1261 acggatgtgc gtctcgcgag ttgtggctac atctatccgg agaacgagga ggtcatcaat 1321 acgcatcatt tcaccaagct gagtatctcg ggcaattttc cagctgctcc acgtggccga 1381 cgattgatca tgcccagctc cttgaatgct ctatttctgc ccgtttcggt ttccgattat 1441 gaatggattg aatcaccaga ggcggcgaat aatctagaca agacaatatt ggtcgatttg 1501 aaactagcga aggcacagaa cgatctgcta acctttgcca tttgggccaa ctactacacc 1561 gatataccca gcactcacaa cttggatcac atgcagccga atggaactca gtccaatcct 1621 tcgacttccg catcctcgac agtttcggca ttctggattt tatgtgtcct caactgtttc 1681 atcagcgtat tatagattac tagttggaaa tacgttagcc cgttcacttt ctgactcaaa 1741 tgttatattt agtcagattt tttttttttt ttgcttatct gaacaccaaa ataaatgtag 1801 agcaaccaaa attttataac tcctcataag aacgaaatgc ctcactaagc cagagtaata 1861 aaagttttgt agattttaaa tttttcaaat ttaaagaaac tgaaggc