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LOCUS NM_132051 2901 bp mRNA linear INV 26-DEC-2023 A (CG3726), mRNA. ACCESSION NM_132051 VERSION NM_132051.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2901) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2901) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2901) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2901) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2901) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2901) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2901) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2901) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2901) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2901) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2901) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2901) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2901) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2901) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2901) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2901) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2901) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2901) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2901) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2901) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2901) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2901) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2901) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132051.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2901 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2901 /gene="CG3726" /locus_tag="Dmel_CG3726" /gene_synonym="Dmel\CG3726" /map="5C7-5C10" /db_xref="FLYBASE:FBgn0029824" /db_xref="GeneID:31525" CDS 570..2600 /gene="CG3726" /locus_tag="Dmel_CG3726" /gene_synonym="Dmel\CG3726" /note="CG3726 gene product from transcript CG3726-RA; CG3726-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_572279.1" /db_xref="FLYBASE:FBpp0070823" /db_xref="GeneID:31525" /db_xref="FLYBASE:FBgn0029824" /translation="MLPQQYCLRWKYHHSNLQTMFSQLLDRGCFCDVTLACEGQLIRA HRVVLCACSTFFDAVLSNYASERDPIIIMKDVTFAEVKCLIEFMYKGEINVEHSSLPS LLKTADDLKIKGLAEVTWRDDEDGPPPPMAAAEFHSPPRSLAESYAQDLILQHQQQQQ QGPAAPPLNLHSSAALLERDRERERERDRERLSPGMEGVLGRMPVMTPLTGASGSAGV GSVSGGTSLEGVAPVEHFLGPKRKRGRPPLDDAYDVFNVRKLAQYAANLEPAQRAYLE TARHFTEEPPLAAHAASMASPPAACPPKQRQRLRHQQQQQQQLLQSESSDQEQPAAGQ DWSNLEPNGSATPKLLSDGDANKQETEGGDESLPAVLTTASSSGTKKLEKIGERRERH GKLRHARRLYEKSGEDEVDPPKEEPDELPQPVEEIENEHLVANRAESPRPTVVIPASF ACKYEGGVTAAGGGSGSGTGSGSLGSSYLINEHGMLMAHEFAPNVASAAATAAVAVAA AAAAVANASAGNGNGGQDVSGSGTGAAADYPDIKLEDYDAAELRLTNEELSQWQDVIK MDDYLAKGRRPQFWEEPFTKRVLDAIKNKRLEMKKAARILGVSYGTLYGRYREVYGCL KHPYSGTAFRNSGSTSTSQMGVQPRFDLGFRNGGVLPAQLVQTNPYLQSWAS" misc_feature 657..911 /gene="CG3726" /locus_tag="Dmel_CG3726" /gene_synonym="Dmel\CG3726" /note="BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins; Region: BTB_POZ_BAB-like; cd18315" /db_xref="CDD:349624" misc_feature 2328..2435 /gene="CG3726" /locus_tag="Dmel_CG3726" /gene_synonym="Dmel\CG3726" /note="helix-turn-helix, Psq domain; Region: HTH_psq; pfam05225" /db_xref="CDD:283007" ORIGIN 1 tttcactcaa aaatccgtct cctccgcggt acgtttcact tcgctgcgcc gctaaaagaa 61 aattcctgga aaatattaac aaacacatga gcctaacatt cttaacaatt ccaaaacaga 121 acatttattt ttggtgaatt tcctgacaat ttagtggtta gtgtttaatg ttaaaacatt 181 gctgtgcgca tttaccgtta tccgctcgca aggcaaaaga aaaagcgcgc gttttgaatt 241 cgctgtttcg cattattttt ttttatgtta aaaaacaaaa tatagaaatg aaacaaaaat 301 ggcaagccag aaattaaatg aatgaatgaa tttttttcga cacaattctg ctgcgtgtgc 361 aattcgattc gaataacaaa acaaaaagca taaaggaaaa gtaaaagaaa ttcgaggggg 421 gaaaaaaacg ccaaaagaaa agatagcgcg aaaagtcata aagaaaagac tggcaactgt 481 ccaaggagta gcttgttggt ggaattacta gaaccggctg ctccaccaga gacaccacca 541 tcaggggcag cagcaggcgc ggcaccacca tgctgccgca gcagtactgc ctaaggtgga 601 agtaccacca tagcaatctg cagaccatgt tctcccagct gctggatcgc ggttgcttct 661 gcgacgtgac cctggcctgc gagggtcagc tcatccgcgc ccatcgcgtc gtcctgtgcg 721 cctgcagcac cttcttcgac gccgtgctct ccaactacgc cagtgaacgt gatccgatca 781 tcatcatgaa ggacgttacc tttgcggagg tcaaatgcct catcgagttc atgtacaagg 841 gcgagatcaa cgtggagcat tccagccttc cctcgctgct gaagaccgcc gatgacctga 901 agatcaaggg cctggccgag gtgacctggc gcgatgacga agacggaccg ccgccaccaa 961 tggccgccgc cgagtttcac tcaccgccgc gcagcttggc agagagttac gcccaggacc 1021 taatccttca gcatcagcaa cagcaacagc agggcccagc tgctccaccc ttgaatttgc 1081 acagctctgc tgcgctcttg gagagagatc gagaacggga aagggaacgt gaccgggagc 1141 gtctctcgcc ggggatggag ggtgtactgg gtcgcatgcc cgtgatgacg ccgctgactg 1201 gcgcatcggg ttcggcagga gtgggttcgg tatccggtgg cacatcgctc gagggcgtcg 1261 ctcccgtgga gcactttctg ggtcccaaac gcaagcgtgg tcgtccgccg ctagacgatg 1321 cctatgatgt tttcaatgta cgcaagctgg cccagtatgc cgccaatctg gagcccgccc 1381 agcgtgccta cttggagacg gcgcgtcact ttacggagga gccgccactg gccgcccatg 1441 ccgcctcgat ggcctcccca cccgccgcct gcccgccgaa acagcgccag cgtctacgtc 1501 accagcagca gcagcagcaa cagctgctac agtcggagag cagtgaccag gagcagccgg 1561 ctgctggcca ggattggtcc aatttggagc caaatggcag tgccacgccc aaactgctca 1621 gcgatggcga tgctaacaag caggaaacgg agggcggtga tgaatcgcta ccggcagtgc 1681 taaccaccgc cagcagcagc ggcaccaaaa agctggaaaa gataggcgag cgtcgcgaac 1741 gccatggcaa attacgtcat gctcgtcgcc tttatgagaa gtctggagag gatgaggttg 1801 atccgcccaa ggaggagccc gatgagctgc cgcaaccggt ggaagagatc gagaacgagc 1861 atctggtggc aaatagggca gagtcgccgc gtcctacggt cgtcatacca gctagttttg 1921 cctgcaaata cgagggaggc gtgactgccg caggcggtgg ctccggttct ggaactggat 1981 ccggatcgct tggatcctcc tacttgatca acgaacatgg catgctgatg gcccacgaat 2041 ttgcaccgaa tgtggccagt gccgccgcca ccgcagctgt ggccgttgca gcagccgccg 2101 ctgcagtggc aaatgcctca gccggaaacg gaaacggtgg tcaggatgta agtggcagtg 2161 gaaccggtgc cgccgccgac tatcccgaca tcaagctgga ggactacgat gccgccgaac 2221 tgcgactgac caacgaggag ctgtcgcagt ggcaggacgt catcaagatg gacgactacc 2281 tggctaaggg gcggcgtcca cagttctggg aagagccatt caccaagcgc gtgttggacg 2341 ccattaaaaa caaaagactc gagatgaaga aggccgccag aattctgggc gtctcctatg 2401 gcactctgta tgggcgttac cgcgaggtct atggctgcct taagcatcct tacagtggca 2461 ccgccttccg gaactctgga tccacctcga ccagtcagat gggagttcag cctcgcttcg 2521 acttgggatt ccgcaacggg ggcgtccttc cagctcagct ggtccaaacc aatccctact 2581 tgcagagctg ggcaagctga agaaggatct gagcgagcta tggacacgtc cgcagatttg 2641 aggaccaacc aatgccacaa ccataacgaa actgcagaaa agcctcaaac gtcgccacag 2701 gctgatctag gattacaaca gaaggatgaa agacagctag acgaggctag ttttggatcc 2761 tgagtaatgc tttcctgaat cctgaattcc cacattaatg tgttgttccc atcggtgggt 2821 cacaactata actgatctac acatttagga tcttattatt acataatata taatataata 2881 taaatacatg tctataaata c