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LOCUS NM_132050 2001 bp mRNA linear INV 26-DEC-2023 transcript variant A (Shmt), mRNA. ACCESSION NM_132050 VERSION NM_132050.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2001) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2001) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2001) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2001) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2001) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2001) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2001) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2001) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2001) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2001) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2001) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2001) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2001) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2001) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2001) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2001) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2001) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2001) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2001) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2001) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2001) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2001) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2001) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_132050.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2001 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2001 /gene="Shmt" /locus_tag="Dmel_CG3011" /gene_synonym="144561_at; anon-WO03040301.100; CG3011; Dmel\CG3011; HTMLA; Q9W457; shmt; SHMT; Shmt2" /note="Serine hydroxymethyl transferase" /map="5C7-5C7" /db_xref="FLYBASE:FBgn0029823" /db_xref="GeneID:31524" CDS 258..1871 /gene="Shmt" /locus_tag="Dmel_CG3011" /gene_synonym="144561_at; anon-WO03040301.100; CG3011; Dmel\CG3011; HTMLA; Q9W457; shmt; SHMT; Shmt2" /EC_number="2.1.2.1" /note="CG3011 gene product from transcript CG3011-RA; CG3011-PA; Shmt-PA; serine hydroxymethyl transferase 2; serine hydroxymethyltransferase 2; beta-hydroxy-Epsilon-N-trimethyllysine aldolase; glycine hydroxylmethyltransferase" /codon_start=1 /product="serine hydroxymethyl transferase, isoform A" /protein_id="NP_572278.1" /db_xref="FLYBASE:FBpp0070792" /db_xref="GeneID:31524" /db_xref="FLYBASE:FBgn0029823" /translation="MQRARSTLTQKLRFCLSRDLNTKVGNPVNFETGKLSGALTRIAA KKQPSPTPFLPAIRRYSDSKQSTLKNMADQKLLQTPLAQGDPELAELIKKEKERQREG LEMIASENFTSVAVLESLSSCLTNKYSEGYPGKRYYGGNEYIDRIELLAQQRGRELFN LDDEKWGVNVQPYSGSPANLAVYTGVCRPHDRIMGLDLPDGGHLTHGFFTPTKKISAT SIFFESMPYKVNPETGIIDYDKLAEAAKNFRPQIIIAGISCYSRLLDYARFRQICDDV GAYLMADMAHVAGIVAAGLIPSPFEWADIVTTTTHKTLRGPRAGVIFFRKGVRSTKAN GDKVLYDLEERINQAVFPSLQGGPHNNAVAGIATAFKQAKSPEFKAYQTQVLKNAKAL CDGLISRGYQVATGGTDVHLVLVDVRKAGLTGAKAEYILEEVGIACNKNTVPGDKSAM NPSGIRLGTPALTTRGLAEQDIEQVVAFIDAALKVGVQAAKLAGSPKITDYHKTLAEN VELKAQVDEIRKNVAQFSRKFPLPGLETL" misc_feature 492..1865 /gene="Shmt" /locus_tag="Dmel_CG3011" /gene_synonym="144561_at; anon-WO03040301.100; CG3011; Dmel\CG3011; HTMLA; Q9W457; shmt; SHMT; Shmt2" /note="serine hydroxymethyltransferase; Provisional; Region: PLN03226" /db_xref="CDD:215639" misc_feature order(510..512,516..518,537..542,567..569,582..584, 636..638,690..695,717..719,774..776,795..797,915..920, 1332..1334,1386..1388) /gene="Shmt" /locus_tag="Dmel_CG3011" /gene_synonym="144561_at; anon-WO03040301.100; CG3011; Dmel\CG3011; HTMLA; Q9W457; shmt; SHMT; Shmt2" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99733" misc_feature order(579..581,639..641,669..671,780..785,864..866, 1029..1031,1104..1106,1113..1115,1188..1193,1209..1211, 1623..1625) /gene="Shmt" /locus_tag="Dmel_CG3011" /gene_synonym="144561_at; anon-WO03040301.100; CG3011; Dmel\CG3011; HTMLA; Q9W457; shmt; SHMT; Shmt2" /note="glycine-pyridoxal phosphate binding site [chemical binding]; other site" /db_xref="CDD:99733" misc_feature order(579..581,864..866,1191..1193,1623..1625) /gene="Shmt" /locus_tag="Dmel_CG3011" /gene_synonym="144561_at; anon-WO03040301.100; CG3011; Dmel\CG3011; HTMLA; Q9W457; shmt; SHMT; Shmt2" /note="active site" /db_xref="CDD:99733" misc_feature order(645..647,666..668,849..851,861..863,867..869, 1308..1310,1578..1580) /gene="Shmt" /locus_tag="Dmel_CG3011" /gene_synonym="144561_at; anon-WO03040301.100; CG3011; Dmel\CG3011; HTMLA; Q9W457; shmt; SHMT; Shmt2" /note="folate binding site [chemical binding]; other site" /db_xref="CDD:99733" ORIGIN 1 tgttagcctg gtaaatgttg tttaccaacg taacgcgtgt tttcgcttcg ttgtattttc 61 ggtgtcgaat attttggatg ctggccaaga gatagcgcag cgatcgggtc ggaactcttg 121 ggcggactta tcactgggtc ggtcaggggt cacgggttat cgttatcgct tatcagccag 181 cggcggcgtc atctcagcgc cggcgactct tctcactttg cggcagttcc gattcgaacg 241 cagccgttta caaagacatg cagcgggcgc gctctacact gacacaaaag cttcggtttt 301 gccttagtcg ggacctgaac accaaagttg gcaacccggt taacttcgag actggaaagc 361 ttagcggagc tttaactcgc atcgccgcca aaaaacaacc atcaccaacg ccattcttac 421 cggcgatcag acgatattcg gactccaagc agagcacttt gaagaatatg gccgatcaga 481 aactgctgca aaccccgctg gcacagggcg atccggagct ggccgagctg atcaagaagg 541 agaaggagcg ccagcgcgaa ggactcgaga tgatcgccag tgagaacttc acctcggtgg 601 cggttctcga gagcctgagc tcctgcctga ccaacaagta ctccgaggga tatcccggca 661 agaggtacta cggtggcaac gagtacatcg accgcataga gctgctcgcc cagcaacgcg 721 gacgcgagct gttcaacctg gacgatgaga agtggggcgt taatgtgcag ccttattccg 781 gatccccggc caatctggct gtctacacgg gcgtctgccg gccccacgat cgcatcatgg 841 gcctggatct gcccgatggc ggtcacttga cgcacggttt cttcacgccc accaagaaga 901 tatcggccac atcgatcttc ttcgagagca tgccgtacaa agtgaacccg gagacgggca 961 tcatcgatta cgataagttg gcggaggcgg cgaagaattt ccggccgcag atcatcattg 1021 ctggcatatc gtgctactcc cgtctgctgg actatgcgcg tttccgacag atttgcgatg 1081 atgtgggcgc ctacctgatg gccgacatgg cccatgtggc gggcattgtg gccgcgggat 1141 tgataccatc gccgttcgaa tgggccgaca ttgtgaccac caccacgcac aagacactgc 1201 gaggtccgcg cgccggcgtg atcttcttcc gcaagggcgt gcgcagcacc aaggccaatg 1261 gagacaaggt actctacgat ctggaggagc gcatcaacca ggcggtgttt ccatcactcc 1321 agggtggtcc gcacaacaac gccgtggctg gcattgccac cgccttcaag caggccaaga 1381 gtcccgaatt caaggcctac cagacgcagg tgctcaagaa tgccaaggcc ctgtgcgatg 1441 gcctcatttc gcgaggctat caggtggcca ccggcggcac cgacgtccat ttggtgctgg 1501 tcgatgtgcg taaggctggc ctgaccggcg ccaaggccga gtacatcctc gaggaggtgg 1561 gcatcgcgtg caacaagaac actgtgcccg gcgacaagtc cgccatgaat ccctccggca 1621 tccggctggg cacaccggcc ctgaccactc gcggccttgc cgagcaggac atcgagcagg 1681 tggtggcctt catcgatgct gccctaaagg ttggcgtcca ggcagccaag ctggccggca 1741 gtcccaagat aaccgattac cacaagacgc tggccgagaa tgtggagctc aaggcccagg 1801 tggacgagat ccgcaagaat gtggcccagt tcagcaggaa attcccgctg cccggcctgg 1861 agaccctgta ggtgctgcct gctttgtttg tccctttttc ttttgttcgc cttacgattt 1921 acatcctcga aaagtccgct tgttaatatc ataagtggga attagtagtt aagccattaa 1981 acgcatttca gtttacatac c