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LOCUS NM_132049 3038 bp mRNA linear INV 26-DEC-2023 B (CG12236), mRNA. ACCESSION NM_132049 VERSION NM_132049.5 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3038) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3038) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3038) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3038) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3038) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3038) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3038) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3038) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3038) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3038) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3038) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3038) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3038) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3038) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3038) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3038) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3038) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3038) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3038) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3038) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3038) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3038) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3038) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132049.4. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3038 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3038 /gene="CG12236" /locus_tag="Dmel_CG12236" /gene_synonym="DDO; Dmel\CG12236" /map="5C7-5C7" /db_xref="FLYBASE:FBgn0029822" /db_xref="GeneID:31523" CDS 358..1890 /gene="CG12236" /locus_tag="Dmel_CG12236" /gene_synonym="DDO; Dmel\CG12236" /note="CG12236 gene product from transcript CG12236-RB; CG12236-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_572277.2" /db_xref="FLYBASE:FBpp0070791" /db_xref="GeneID:31523" /db_xref="FLYBASE:FBgn0029822" /translation="MATTQQYSLRWNNYLRHLTYSLDNHRLNDDFVDVSLCVDGRRIK AHKVVLSSCSSYFKEIFKENPHPHPVIIFKFIKFEDLNSIIEFMYQGEVNVQQEALQS FLQTAELLAVQGLTAEEKEKPQIPVAPLISEHKLIKTIPSTIRAVNEQQQQVSNVAQA QTATQTIEIPAATLLQATNASQVPSQVVAAAAAAAAAQQLQVQHQQQQHHHVQTTQIQ HIQVQSAPPPQQQQQQQQQQQQQQQQQQQQQQQQSQQQQTTPVQTQHLTITNAVALPA ASSVKKRKITFSDDDDNMYTTETVDYAVKDEQTIVKTAEMTFLRGAVKMDIPDYIVGE VDDRLSDGATPQTSQDATTAAAQNVAQYSSEYEILTESEMEEKYQADADNAEIAIEMT RLLGTASGTPGAGSGQVMEDSGGGSATTGPSTTVSVTQVKSDSKASGTNDSPNNKWTE CQFCKMVITTVNLWRHIRTQHTPQPPRKCDMCNKNFKNKYSLREHIRISHEQKVAIKT EN" misc_feature 448..699 /gene="CG12236" /locus_tag="Dmel_CG12236" /gene_synonym="DDO; Dmel\CG12236" /note="BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins; Region: BTB_POZ_BAB-like; cd18315" /db_xref="CDD:349624" misc_feature 1708..1770 /gene="CG12236" /locus_tag="Dmel_CG12236" /gene_synonym="DDO; Dmel\CG12236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1789..1857 /gene="CG12236" /locus_tag="Dmel_CG12236" /gene_synonym="DDO; Dmel\CG12236" /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096" /db_xref="CDD:395048" misc_feature 1792..1851 /gene="CG12236" /locus_tag="Dmel_CG12236" /gene_synonym="DDO; Dmel\CG12236" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN 1 caagaaaaca aaatggaggc gtataatatt tttgtttggc atagaatata agaaattcgt 61 attcgtgtgt gcgaacagcg ccgtaaacaa accccgtaaa agcgggcaaa acaaaaagtg 121 cgagcggtct tagaccaaat aaagaaatcc gccggagtgg atccacacgt tgccgcatcg 181 ttgaaagggt cgcagaaacc ggaggtgttc catattcgcc acttttttgc caaggcgggc 241 agcttccccc ttcccgggaa ttggcgctaa ttggattgga ctggaaagag gaagaggcgg 301 aaagaggaga gcaggagagg gctagggcta ggaggcggac gcagagagga cgccgcaatg 361 gccaccaccc agcagtactc gctgcggtgg aacaactacc tgcgccacct cacctactcc 421 ctggacaacc accggctgaa cgatgacttc gtggacgtca gcctgtgcgt ggatggacgc 481 aggatcaagg cccacaaggt ggtactctcc tcctgctcgt cctactttaa ggagatattc 541 aaggagaacc cacatccgca tccagtcatt atatttaagt ttatcaagtt cgaggatctc 601 aattcgatta tcgagttcat gtaccagggc gaagtcaatg tgcagcagga ggcgctgcaa 661 tcgttcctgc aaactgccga gctgctggcc gtccaaggac tcaccgccga ggagaaggag 721 aagccgcaga tcccggtggc gccgctgatc agcgagcaca agctgatcaa gaccataccg 781 agcaccatac gcgcggtcaa cgagcagcag cagcaggtgt ccaatgtggc ccaggcgcag 841 acagctacgc aaaccatcga aatacccgcg gccactttgc tgcaagccac caacgccagc 901 caggtgccat cgcaggtggt cgcagcagcc gcagcagccg cagcggcaca acagctgcag 961 gtccagcatc aacagcagca gcatcaccat gtacaaacca cccagattca gcacatccaa 1021 gtgcaatcgg caccgccccc gcaacagcag caacagcaac agcagcagca gcagcagcag 1081 cagcagcagc aacaacagca gcagcagcag caatcacagc agcaacaaac gacgcccgtg 1141 cagacgcaac acctgaccat caccaatgcg gtggccctgc cggcggccag ttcggttaag 1201 aagcgaaaga tcacgttctc ggacgacgac gacaacatgt acaccaccga aaccgttgac 1261 tacgccgtca aggatgagca gaccatagtg aaaactgccg agatgacttt cctgcgcggc 1321 gccgtcaaga tggacatacc cgattacatt gttggcgaag tggatgaccg cctgtcggat 1381 ggagcaacgc cgcaaacgtc gcaggatgcc accaccgcag cggcgcagaa tgtggcgcag 1441 tactcatccg agtatgaaat actcaccgag tccgaaatgg aggagaagta ccaggcggat 1501 gcggacaacg ccgaaattgc cattgagatg acccgattgc tgggcaccgc cagcgggacg 1561 ccgggtgcgg gttccggcca agtgatggag gattcgggtg gcggcagcgc gacgactggt 1621 ccctcgacta cggtgtctgt gacgcaggtc aaatcggaca gcaaggccag cgggacgaat 1681 gattcgccca ataataagtg gacagaatgt cagttttgca aaatggttat aaccacggtt 1741 aatctttgga gacatattcg cacccaacat accccacaac cgccgcgcaa atgcgacatg 1801 tgtaataaga attttaagaa caagtacagt ctgcgggagc acatacgcat ctcgcacgaa 1861 cagaaagtgg ccatcaagac ggagaactga tgcgtcttca taagtctcgg tcgcctgcga 1921 gccgcatctg gatctgcaac tgcatctgga ttgagatcga taggatatac ggatagggga 1981 gagagatata gttaattacg tccagcttag cgagcagcca gcaaaaccaa tcaacccaac 2041 cagcccattc cctcgtgttt cgatcaaagg ccccaaaacg aaaactagcc aaatttgtca 2101 acttaaatgc aaagcagata ggagtacgaa acgtttatcc ctatatagtt ctatatataa 2161 caccttgata gccactaagt cgagtcagtc agtcagttag tcagtcggtg gagagtggag 2221 ctggtgatcc cgtcgttgac caagccatgt catgtgtcca cgtaatgcgt acatgtacca 2281 cttgtatttt atagtctacc atttgcttta ggtacttctt cattatacag acggcaagtt 2341 acaagccctc gaaatccatt gacacaccac agaatgtata taaacacaca cacacacaca 2401 cacaaacaca cccaagatga caagaatttt ggaagatttg agagcacttt ggatgcttaa 2461 tagcttagat cgagtgatac tatgtgcaag agaacagaac acaaggattt aatttgattg 2521 tagaaaacta atgttatact tagcccatat cgatcacttt attttagctc ttaaacaacc 2581 tcatatgtat tttttgaaac tctgatatta ttcagttttt gtatatagag ctaggcaact 2641 taacctaaat taaggtaaac ccaaaaacaa agtcccccct ccatgagatt ctctgcccaa 2701 tttgattccg caggaaggaa gctgtgtact ttgctcacaa gcagagatca ggagaatatg 2761 agaaaatata tatattaccc cttgtgtaca aatttaaata cgatttaatc caattacccg 2821 gcgcgctttt gaccatctgt gttcagcatt agagcgttgg cagttgactg taaattagct 2881 aaattagttt tagtttagtt taagacacca caaattcgat tggacatagt ttagttattc 2941 ggtgtaactt aattgagtat accagcccac acgagccaag tgaaaacgga agtcatagcg 3001 cgataagttg aaagtatttt caaaaaaaga aagcgaag