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LOCUS NM_132045 2388 bp mRNA linear INV 26-DEC-2023 attachment 1 (GAA1), mRNA. ACCESSION NM_132045 VERSION NM_132045.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2388) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2388) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2388) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2388) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2388) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2388) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2388) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2388) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2388) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2388) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2388) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2388) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2388) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2388) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2388) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2388) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2388) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2388) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2388) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2388) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2388) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2388) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2388) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132045.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2388 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2388 /gene="GAA1" /locus_tag="Dmel_CG3033" /gene_synonym="CG3033; Dmel\CG3033; GPAA1" /note="Glycosylphosphatidylinositol anchor attachment 1" /map="5C5-5C5" /db_xref="FLYBASE:FBgn0029818" /db_xref="GeneID:31517" CDS 102..2126 /gene="GAA1" /locus_tag="Dmel_CG3033" /gene_synonym="CG3033; Dmel\CG3033; GPAA1" /note="CG3033 gene product from transcript CG3033-RA; CG3033-PA; GAA1-PA; glycosylphosphatidylinositol anchor attachment 1 ortholog" /codon_start=1 /product="glycosylphosphatidylinositol anchor attachment 1" /protein_id="NP_572273.2" /db_xref="FLYBASE:FBpp0070795" /db_xref="GeneID:31517" /db_xref="FLYBASE:FBgn0029818" /translation="MGLLSDPSISTQSKLVDGLARHVRKVCYALYVAGVAWFFCLALP EFNHGTYLSENALSPGLVYPEIRIDANRLAIQLLEELQRERKDHLSTTPHAWIAAKMN EFGLETHTHNYTLRYPFGGGKEYHGKNIYGILRAPRIASTEGIVFAAPYRAASSVHTD ISASVPLLLAFADFARRKNYWAKDLIFLITEQEQLGMQAWLEAYHDGDRELDLSKAYL RPGNLPARAGSLQAALNIEVQDLEIDHVDVRIEGLNGKLPNLDMFNLVQRIMAREGIA SGYKQAPRKKRRHSQSHFEQNFRQMLTMLASQSSGVPTGNHGLFHRYRIDALTIAANR RATHATLKGSPGSAAVPLLKAIEGIARSLNNLLERFHQSFFFYVIVSNDRYISIGDYM PALVALVACAFLKAYLTWSTLPATNAELEKAAGWLREHEQEAELEENLEPDKFELPYG SVLIYLTATLLIGFLCNVLPLQQYFLEIPMGAAPLTTSVLSFLSLIGFVLPFVVVLPP GGLELLHVAFLLIYGCALIVIGLLNFALGLFAAVLTVPLVIALETKEENSRSTLRNTI RLATLVMNPMMVVYVIVLAMTFYQFPELPVQKIMLRAATAAMDASAYGLIDSVIYGNW LYFVICTIFLPLWIICWTLSLSKRRDYADYLDFDESPSTSPQPQSKVKTN" misc_feature 477..2024 /gene="GAA1" /locus_tag="Dmel_CG3033" /gene_synonym="CG3033; Dmel\CG3033; GPAA1" /note="Gaa1-like, GPI transamidase component; Region: Gaa1; pfam04114" /db_xref="CDD:461181" ORIGIN 1 tatcgaggtt atcgataacg cccgcatcga tacaattccg ccggcttgtc cgattcgtgt 61 tgttgtgatt cgggatatat acaggatata gggcagccaa aatgggcctg ctgtccgatc 121 cgtcgatatc gacgcaaagc aagctggtgg acggactggc gcgtcatgtt cgcaaggtgt 181 gctacgccct ttatgtggcg ggtgtggcct ggttcttctg tttggcgctg ccggagttca 241 accacgggac atatctctcc gagaatgctc tttcgccagg cttggtctat ccggagatcc 301 gcatcgatgc gaatcgtctg gccatccagt tgctggagga gctgcagcgg gagcgaaagg 361 atcatctgtc caccacgccg cacgcctgga ttgcggccaa gatgaacgag ttcggcctgg 421 agacgcacac gcacaactac acgttgcgct acccatttgg cggcggtaaa gagtatcacg 481 gcaagaatat ctacggcata ttgagggccc caagaattgc ctccacggag ggcatcgttt 541 ttgcggctcc atatcgcgct gccagttccg tgcacacgga catttccgcc agcgtgccgc 601 ttctgctggc cttcgccgat tttgcccggc gcaagaacta ctgggcgaag gatctgatct 661 tcctgatcac cgaacaggag cagctgggca tgcaggcctg gctggaggct tatcacgatg 721 gcgaccggga actggacttg agcaaggcgt acctgcgtcc tggcaatttg cccgctcgcg 781 ctggttcgct gcaagcggct ctgaatattg aagttcagga tctggagatt gaccatgtgg 841 atgtgcgaat agagggcttg aacggcaagc tgcccaatct ggatatgttc aatctggtgc 901 agagaattat ggcccgcgag ggcatcgcct ctggctataa acaagcgcca cgcaagaagc 961 gtcgtcacag ccagtcgcac ttcgagcaga acttccgcca gatgctgacc atgctggcca 1021 gccagtcgtc gggcgtaccc actggcaatc atgggctgtt ccaccgttat cggatcgatg 1081 ctttgaccat agctgccaat cgaagggcca cccatgccac actgaagggc agcccaggat 1141 cggcagcggt gcctttgctg aaggccatcg agggaatagc caggagtctg aacaaccttc 1201 tggagcgctt ccatcaaagc tttttcttct atgtgatcgt aagcaacgat cgctacatct 1261 ccattgggga ttatatgccc gctttggtgg ctctggtagc ttgtgccttc cttaaggcct 1321 atctaacgtg gtccacgctc ccggcgacca acgctgagct ggaaaaggcc gctggctggc 1381 ttagggagca cgaacaggag gcggaactgg aggagaacct agagccggat aagttcgagc 1441 tgccgtatgg ttcggtattg atttacctta ctgccaccct gttgattggt ttcctgtgca 1501 acgtgctgcc cctgcagcaa tatttcctag agattcctat gggcgccgca ccactgacca 1561 cctcagtact gagttttctt tctctgatcg gtttcgttct gccctttgtg gtggttttgc 1621 cgcccggagg attggagctg ctgcatgtgg cctttctgct aatctatggc tgcgctttaa 1681 tagtcatcgg gctcctcaac tttgccctgg gcttatttgc ggccgtgctg actgtaccgc 1741 tggtcatcgc gctggagacc aaggaggaga actcgcgcag cacgctgagg aacacgatcc 1801 gcttggccac gctggtcatg aatcccatga tggtcgttta tgtgatcgtg ctggccatga 1861 cattctacca gttcccggag ctgccggtgc agaagatcat gctgagggcg gccaccgcgg 1921 ccatggatgc ctcggcttat ggacttatcg attccgtgat ttatggcaac tggctgtact 1981 ttgtcatctg cacgattttc ctgccgctgt ggatcatctg ctggaccttg tcgctgtcca 2041 agcgacgcga ctacgcagat tacctggact tcgatgagtc gccatcaacg tcgccgcagc 2101 cgcagtcaaa ggtgaaaacg aattgaggag acgaacagca cggattgcca ttcactggct 2161 acatatatca actggaaatg atcctaagat gaagtgtgat aaacccaaca aaactgtgtg 2221 tgatggcggt aagagattgc acatgcagag aaaattccat ttaaatgtta tgcatttgat 2281 taaatgtcta aataaaagaa gcctatttat tagttggaat aactaagtgt aaatgtaatc 2341 caaaaaatat taaatatacc acggcatttt cgatgttgat tcccagtt