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LOCUS NM_132037 2343 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_132037 VERSION NM_132037.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2343) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2343) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2343) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2343) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2343) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2343) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2343) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2343) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2343) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2343) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2343) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2343) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2343) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2343) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2343) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2343) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2343) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2343) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2343) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2343) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2343) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2343) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2343) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_132037.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2343 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2343 /gene="CG12239" /locus_tag="Dmel_CG12239" /gene_synonym="Dmel\CG12239" /map="5C2-5C2" /db_xref="FLYBASE:FBgn0029810" /db_xref="GeneID:31509" CDS 103..2055 /gene="CG12239" /locus_tag="Dmel_CG12239" /gene_synonym="Dmel\CG12239" /note="CG12239 gene product from transcript CG12239-RA; CG12239-PA" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_572265.1" /db_xref="FLYBASE:FBpp0070780" /db_xref="GeneID:31509" /db_xref="FLYBASE:FBgn0029810" /translation="MMRQRLSVLLLLLHLGCLTLAWASSRHFCGDTSGRDICNDGRWD GHQRQDDYDEHMVYRQGAAESQRRDRVDSVARDDRGKERREETRVRLDSSLRLEAREA RNERRETREERVQPRETREVRVDRRAAREDQLDAREARDERREAREERVQALETREAR VDRRESREDREDRRESRADREDRRESREDRLEGREARVQRVEQREARDNQVELREIRE IREHRRVTPEERVEQRGIREDRVERHEADEGQRDTRKMERRGERESDRRDFETRRLAA NERRVERRVEREMSRREERINRRDDRTSLDMDLSRRMEREQTERDSEERIESDNHRRA EDRRVERREERENRVRFVFDVRSDEDNSRRSEVRKEERDNERSVERREERNSARRADQ DEDLDRVNHRREANEDVRRAEQESFRRIDLRRVVVDDGARDEGRRIENSISRREDRQA ERTEERVAERRMERVEEEVEREDSRRVERREIQRRVNGEEFRTNERREEREDTRREDR VDTSREEREDTRRVERDGLRREERDEERVDFRRVDLRREERDNQREDLRRERRVQRRE ERVDRDHVQRELSRRAIREPLDERVLLDSQVKTKGWLSYGKRELLMTGQILLVAALYK KSTASGKGFGHALNEQIQGYLQAIGC" misc_feature <277..>1842 /gene="CG12239" /locus_tag="Dmel_CG12239" /gene_synonym="Dmel\CG12239" /note="Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:440809" misc_feature 286..>906 /gene="CG12239" /locus_tag="Dmel_CG12239" /gene_synonym="Dmel\CG12239" /note="transcription termination factor Rho; Provisional; Region: PRK12678" /db_xref="CDD:237171" ORIGIN 1 gccaagtcat tccagttgcg tatactgctg gtgaaacagc aacggactga atcttcgatc 61 ttcttccatc gtacctgaca accaagcacc actgagccac caatgatgag acaacggctt 121 agcgttctgc tccttctgct ccaccttggc tgtttaactt tggcatgggc aagcagcagg 181 cacttctgtg gcgacacttc cggccgtgac atctgcaacg atggccgctg ggatggccat 241 cagcgccagg acgattacga tgagcacatg gtttacagac aaggcgcggc ggagagtcag 301 aggagagacc gcgtagattc agtggcgcgt gatgatcgcg gcaaggaaag gcgcgaggaa 361 acaagagttc ggttggactc atccctgcga cttgaggctc gtgaagctcg caatgagcga 421 cgtgaaaccc gagaagagcg tgtacagcca cgcgaaactc gcgaagttcg agtggaccga 481 cgtgcagctc gtgaagatca actagatgct cgcgaagctc gtgatgagcg acgagaagct 541 cgggaagaac gagtacaggc actcgaaact cgtgaagctc gagtggaccg acgtgaatct 601 cgtgaagatc gagaagaccg acgtgaatcg cgtgcagatc gagaagaccg acgtgaatct 661 cgtgaagatc gattggaggg tcgggaagct cgcgtccaac gagtggagca acgcgaagct 721 cgtgacaatc aagttgagct ccgtgaaatt cgtgagatcc gagaacatcg acgtgtaact 781 ccagaagaac gagtcgagca acgcggcatc cgtgaggacc gtgttgagcg acatgaagct 841 gacgaaggac aacgagatac tcgtaagatg gagcgacgtg gggagcgcga atcggacagg 901 cgtgacttcg aaactcggcg actagcggcg aacgaaagac gagttgaacg ccgagtagaa 961 cgcgaaatgt ccagacgtga ggaacgcatt aatcgccgtg acgatcgaac tagtctagac 1021 atggatttgt cccgacgcat ggaacgtgaa cagactgagc gagactctga ggaacgcatc 1081 gagagcgaca atcatcgacg agcagaagat cgacgtgttg aacgacgcga agagcgagag 1141 aaccgagttc gatttgtttt tgatgttagg tctgacgaag acaactctcg acgaagcgaa 1201 gtccggaagg aagagcgcga caatgaacgc agcgtagagc gacgggaaga gcggaactca 1261 gctaggcgtg cggaccaaga tgaagatctc gacagggtca accaccgccg agaagcgaat 1321 gaagacgttc gccgtgcaga gcaagaatcc ttccgtcgaa tcgacttgcg acgagtggtg 1381 gtagacgacg gtgctcgaga tgagggacga aggattgaaa acagtattag ccgcagggaa 1441 gaccgtcaag ctgaacgtac cgaggaacgt gtagcagagc gcagaatgga gcgtgtcgaa 1501 gaggaagtag aacgcgaaga ttcccgacga gttgagcgaa gagaaataca acggcgagta 1561 aatggggaag agttccgtac taatgagcgg cgagaggagc gagaagacac acgtcgtgag 1621 gaccgagtag acacatctcg cgaggagcga gaagacacac gtcgagtcga gcgcgatggt 1681 ctgcgaagag aagaacgaga cgaggagcgg gttgattttc gaagagttga tcttcgcagg 1741 gaagagcgag ataatcaaag ggaagatctt cgccgagaac gccgagtaca gcgccgtgag 1801 gaacgagtag accgtgatca tgttcaacgc gagctttcca gacgagcgat tcgtgagccc 1861 ttggatgagc gtgtacttct tgactcccaa gtgaaaacca aaggctggct gagctatgga 1921 aaacgagaac tgctgatgac cgggcagatc ctcctcgtgg ccgctctcta caagaagtcc 1981 acggccagcg gcaagggatt tggtcatgca ctgaatgagc agatccaggg ctacttgcag 2041 gccattggtt gctaggatgc acaaaggaaa tcgatgaccc ttcccaaatt tgaaagcacc 2101 gaatgagtaa acggatatgg atcaaggaaa ataggcatta ctacccccag aaaaagcaaa 2161 cggacccgac agcaagcgac gagcagagga atgggatggg ttactccgcc ggagcattgt 2221 acaatttaat ccaactgtta ctgtaaccaa aaaccttccc cctttcctgt tgtagccaac 2281 aaaagcataa cgaaaatata tgatgggatg ctcgagtagc cgagcatctg caaactgcat 2341 tgc