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LOCUS NM_132008 2779 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_132008 VERSION NM_132008.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2779) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2779) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2779) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2779) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2779) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2779) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2779) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2779) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2779) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2779) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2779) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2779) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2779) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2779) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2779) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2779) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2779) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2779) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2779) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2779) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2779) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2779) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2779) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On May 8, 2012 this sequence version replaced NM_132008.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2779 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2779 /gene="Pop1" /locus_tag="Dmel_CG32763" /gene_synonym="BcDNA:LD21623; CG32763; CG4129; Dmel\CG32763; l(1)G0045; l(1)G0312" /note="POP1 ribonuclease P/MRP subunit" /map="5A8-5A8" /db_xref="FLYBASE:FBgn0026702" /db_xref="GeneID:31475" CDS 77..2650 /gene="Pop1" /locus_tag="Dmel_CG32763" /gene_synonym="BcDNA:LD21623; CG32763; CG4129; Dmel\CG32763; l(1)G0045; l(1)G0312" /note="CG32763 gene product from transcript CG32763-RA; CG32763-PA; Pop1-PA; lethal (1) G0045" /codon_start=1 /product="POP1 ribonuclease P/MRP subunit" /protein_id="NP_572236.3" /db_xref="FLYBASE:FBpp0070748" /db_xref="GeneID:31475" /db_xref="FLYBASE:FBgn0026702" /translation="MSTQKVEYDAALGGRVTLPSHVTTYHYAAEALQEIRNLVADCQE TTQRSSKLIFQTLPKHMRRRAMSHHPKRLPRKYRQAHKSQMGKSGNQPVNGKRPSRKY RRRPKNLMREYVRRQRRHVWLETHIWHAKRFHMVDRWGHRLPYASCDKTYRACYRASA EHCLLQDISFYGCVELRGPLDMLREGFARLTSPQCGLGITARTFLSGRREGSVELFED GRYPYGALQRASFMWRPRREEEDEKQTNHTLWLWLHPSGAQAVLNQLISVFQLKSTRQ QKLPLNEAVTEEKMDVDKIEPVELSKETSPGKKNSKKKPEQRPLRFWTKTKAFDPQPS YFNSDGTLHLVLLQREFNRFRLTGPRAQKVLFASLRPHREEELQDKANYCQAALQLSS PAELLSNLVMAHLVVDPRLQRPKKRTKAVGKMEQPPLSAGDLLMNQPKSLPESPLWSK KARERLAKGIMSAHKYDQLREQHAVVPGAPCAFEQQMQALPVILIQRPGSQDPRYKRL GYGCGWDVIAPAGYGMTLWLTLTMWGARPGGLRELDSVAREAGAEIHLPDTLAGVQRA AASADELRARYFRMPPNKRTNYRKLAVVSPFTAPWRHLVRDWRASFSSASEGSSFYVL RHRQQLEEIVESIRHRSPLPQTLPDDAIIQIQLQLLSRGHVKDNALICLPTAADHKKR WRQLKHNDQAPVHVEPTQPDLNEQLRKELRQSHKLKLKRLRSRRVREKRRLQETATKR VHIRPANTAHLVRGQLQEMCRLWLPTDPAELRDSVRRQCSRQVFGYVSTAGFSFTEAL VCAVGYVTPAGLQQLIEELPASKGNRKQPPLMCLVRDADSRDYRWASFQVNLNVASPT F" misc_feature 173..613 /gene="Pop1" /locus_tag="Dmel_CG32763" /gene_synonym="BcDNA:LD21623; CG32763; CG4129; Dmel\CG32763; l(1)G0045; l(1)G0312" /note="Ribonucleases P/MRP protein subunit POP1; Region: POP1; pfam06978" /db_xref="CDD:429227" misc_feature 1613..1879 /gene="Pop1" /locus_tag="Dmel_CG32763" /gene_synonym="BcDNA:LD21623; CG32763; CG4129; Dmel\CG32763; l(1)G0045; l(1)G0312" /note="POPLD (NUC188) domain; Region: POPLD; pfam08170" /db_xref="CDD:462391" ORIGIN 1 aagaaaccgc cacacgtgcc gccgatttgt tttgattttg gatgcattgg atcctggcca 61 aattagttag tccccgatga gcacacagaa ggtggagtac gacgctgcgt tgggcggccg 121 ggtcacactg ccgtcgcacg tgaccacgta ccattatgcg gccgaggcgc tgcaggagat 181 tcgcaatttg gtggccgact gccaggagac gacgcagcgg agcagcaagc taatcttcca 241 gacgctgccc aagcacatgc gccgccgcgc catgtcgcac catcccaagc gactgccgcg 301 caagtaccga caggcgcaca agtcccaaat gggcaaaagc ggcaaccagc cggtgaatgg 361 gaaacgacca tcgaggaagt accgccggag acccaagaat ctgatgcgtg agtacgtgcg 421 ccggcagagg cggcacgtct ggctggagac gcacatctgg cacgcgaagc gattccacat 481 ggttgaccgc tggggccacc ggttgcccta cgccagctgc gacaagacct accgcgcttg 541 ctatcgcgcc agcgccgagc actgcctgct gcaggacatc tcgttctatg gttgcgtgga 601 gttgcgggga cccttggaca tgctacgcga gggattcgcc cggctaacaa gtccgcagtg 661 tggccttggg atcacggccc ggacttttct gagcggacga cgtgagggca gcgtggagtt 721 atttgaggat ggccgctatc cgtatggagc cctgcagcgg gccagtttta tgtggcggcc 781 acggcgggag gaggaggatg agaaacagac gaatcacacg ctctggctgt ggctacatcc 841 cagtggcgct caagctgttc taaatcagct tataagcgtg ttccagctga aatccacaag 901 gcaacaaaag ctgcctttaa acgaggctgt gactgaggaa aagatggatg tggataagat 961 tgagccagtc gagttgtcca aggaaacatc gcctggcaag aaaaactcga agaagaagcc 1021 tgaacagagg cccctgcgct tctggacaaa aacgaaagca ttcgatccac agcctagcta 1081 cttcaattcc gacggcactc tccacttggt actgctgcag cgggagttta atcgtttccg 1141 tttgacaggg cctagagccc aaaaagttct ttttgccagc ttacgtccgc atcgagaaga 1201 ggagctccag gataaagcca actactgtca ggcagccttg cagctgagct cgcccgccga 1261 actgctgtcc aatctggtga tggcccacct tgtagtggat ccgcgcctgc agcggcccaa 1321 gaagcgtacg aaagcagtcg gcaaaatgga acagccacca ttatccgccg gcgatcttct 1381 catgaatcag ccaaagagtc tgccggagag tcctctgtgg agcaagaagg cgagagagcg 1441 gctggccaaa ggcattatgt ccgcgcacaa gtacgaccag ctgcgagaac aacatgccgt 1501 tgtgccagga gctccatgtg ccttcgaaca gcaaatgcag gcgcttcccg tgatacttat 1561 tcaaagacca ggatctcagg accccagata caagagattg ggctacggct gcggctggga 1621 tgtgattgca ccggcaggat acggcatgac cctctggcta acactcacca tgtggggcgc 1681 cagacccggc ggattgaggg aactggattc ggtggctagg gaggcaggtg ccgaaataca 1741 tctgccagat acattagcgg gagttcaaag agctgctgct tcggcggatg agctccgtgc 1801 ccggtatttc cgtatgccgc ccaataagcg taccaattac cgaaagttgg ccgtggtcag 1861 tccgtttact gcaccctgga ggcatctagt gcgcgactgg cgtgcatcat tcagttctgc 1921 gagcgaggga tcatcgttct atgtgctgcg gcatcgccag cagctggagg agattgtcga 1981 gagtattcga catcgtagcc cactgccaca gactctgccc gacgacgcca tcatacagat 2041 tcaacttcaa ttgctatccc gtggccatgt gaaggacaac gccctgattt gcttgcccac 2101 ggcggcggat cacaagaagc gctggcgaca gctaaagcac aacgaccagg cccccgttca 2161 cgtggagcca acgcaaccgg acctgaatga acagttgcgc aaggagctac gccagagtca 2221 caagctaaag ctgaagcgat tgcgatcgag aagggtgcgt gagaagcggc gccttcagga 2281 gactgccacc aaacgtgtcc acatacggcc agcgaatacg gctcatctcg tacgtggcca 2341 actacaggag atgtgccgcc tgtggctgcc caccgatccg gcggagctgc gggacagtgt 2401 gcgtcgccag tgtagtcgcc aagtgtttgg ctacgtgagc acggccggct tcagcttcac 2461 ggaggcactc gtctgtgcag tgggctatgt gacacccgcc ggcctgcagc agctcatcga 2521 ggagctccca gcatctaagg gcaaccgcaa acagccgccg ctaatgtgcc tggtgcgcga 2581 tgcggatagc cgcgactatc gctgggccag ctttcaggtc aacctgaatg tggctagtcc 2641 aaccttttga tcgactttag ttagtagtca gtagttactt agttgtaagt taaatccaat 2701 cgtgtctttg aaaaaagttc gatttaatct gcttttaact gttttaaccc gtcaataaaa 2761 caacttgaaa atttgttgt