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LOCUS NM_131991 2485 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_131991 VERSION NM_131991.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2485) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2485) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2485) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2485) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2485) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2485) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2485) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2485) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2485) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2485) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2485) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2485) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2485) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2485) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2485) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2485) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2485) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2485) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2485) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2485) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2485) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2485) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2485) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_131991.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2485 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2485 /gene="NAAT1" /locus_tag="Dmel_CG3252" /gene_synonym="anon-WO0149848.3; CG3252; Dmel\CG3252; dmNAT1; DmNAT1; Naat1" /note="Nutrient Amino Acid Transporter 1" /map="4F9-4F9" /db_xref="FLYBASE:FBgn0029762" /db_xref="GeneID:31457" CDS 284..2209 /gene="NAAT1" /locus_tag="Dmel_CG3252" /gene_synonym="anon-WO0149848.3; CG3252; Dmel\CG3252; dmNAT1; DmNAT1; Naat1" /note="CG3252 gene product from transcript CG3252-RA; CG3252-PA; NAAT1-PA" /codon_start=1 /product="nutrient amino acid transporter 1" /protein_id="NP_572219.1" /db_xref="FLYBASE:FBpp0070763" /db_xref="GeneID:31457" /db_xref="FLYBASE:FBgn0029762" /translation="MELKGVQPSNGSSNGSGNGATNAASTEKTDAEKPTAERTNWGNG LEFLMSCISVSVGLGNVWRFPFTAYENGGGAFLIPYIIVLFLIGKPMYYLEMIMGQFT SQGTVKIWSVVPGFVGVGYGQAFGTICIISYYSSLLALTLYYLFVSFQSELPWSYCRD EWTNCVNSRPQEYVDNLLTGVSLANESARNLSGIVANDETEKLQSSSELYFLNVVIKE KLDISDGVGDPDWKLTLALFVAWVVIFLVIMRGVKSSGKAAYFLALFPYVVLFVLLIR AVTLEGARDGILFFLEPQWGELLNPTVWKEAVVQCFFSLAVGSGPIIMFASYNRFDHG IYRDAMIVTTLDTLTSLLGGITIFAILGNLAHNLQIENIRDVVRSGTGLAFISYPDAI SKFQAVPQLFSVLFFFMLFVLGIGSIVALQSTIVTIICDQFKGWKYWKVALTTSVCGF LMGLVYVTPGGQWILTLVDFYGGTYVVFILAIFELAGIVWVYGLQNFCDDIEFMCNRR VSLYWRVCWSFFTPVMMIIIFIYSMVTIEPIKYSELYFPEAANIAGWLLFAIGAAQFP LWGLWYISRHPQGTYWKSLKASLKPSDRWGPANPEIRREWVIFKNQKAAQRATQKDTS KLGFFWRKVANFCGSNK" misc_feature 401..1882 /gene="NAAT1" /locus_tag="Dmel_CG3252" /gene_synonym="anon-WO0149848.3; CG3252; Dmel\CG3252; dmNAT1; DmNAT1; Naat1" /note="Solute carrier 6 family, neurotransmitter transporters; solute-binding domain; Region: SLC6sbd; cd10324" /db_xref="CDD:271359" misc_feature order(440..442,449..451,1520..1522,1529..1534) /gene="NAAT1" /locus_tag="Dmel_CG3252" /gene_synonym="anon-WO0149848.3; CG3252; Dmel\CG3252; dmNAT1; DmNAT1; Naat1" /note="Na binding site 2 [ion binding]; other site" /db_xref="CDD:271359" misc_feature order(446..448,452..463,683..685,1220..1225,1238..1240, 1244..1246,1532..1534,1541..1546) /gene="NAAT1" /locus_tag="Dmel_CG3252" /gene_synonym="anon-WO0149848.3; CG3252; Dmel\CG3252; dmNAT1; DmNAT1; Naat1" /note="substrate binding site 1 [chemical binding]; other site" /db_xref="CDD:271359" misc_feature order(446..448,461..463,1223..1225,1319..1321) /gene="NAAT1" /locus_tag="Dmel_CG3252" /gene_synonym="anon-WO0149848.3; CG3252; Dmel\CG3252; dmNAT1; DmNAT1; Naat1" /note="Na binding site 1 [ion binding]; other site" /db_xref="CDD:271359" misc_feature order(467..472,680..682,692..694,701..703,1424..1426, 1436..1438) /gene="NAAT1" /locus_tag="Dmel_CG3252" /gene_synonym="anon-WO0149848.3; CG3252; Dmel\CG3252; dmNAT1; DmNAT1; Naat1" /note="substrate binding site 2 [chemical binding]; other site" /db_xref="CDD:271359" ORIGIN 1 ctcagttcca gccgcggcat tcacggcacc acaagcgcgc ctccagcacc gccaagtagc 61 caaaatccac agcccaaatt acgaaaatat tacagaaaac taaaccctga aactgcagtt 121 ggacgctaac ccaaccaacc gtaaccaagg gctggccaaa tgcaatgtgc taattactat 181 taacaaaaaa aaaaaaaata aataattagt aattaaataa gcaaaacgcg agtagccgtc 241 aactgttttc attaaccggg aaaattaaca agtggctaga aaaatggaat tgaaaggagt 301 tcagccatcg aatggcagct caaatggaag tggaaatgga gccaccaatg ctgcatcaac 361 ggaaaaaaca gatgccgaga agccgacggc ggagcgcacc aattggggca atggcctgga 421 gtttctaatg tcctgcatat cggtgtccgt gggattgggc aacgtctgga ggttcccgtt 481 cacggcctat gagaatggag gaggcgcctt ccttataccc tacatcatag tgctctttct 541 gatcggcaaa cccatgtact atttggagat gatcatgggc cagttcacga gccagggaac 601 ggtgaagatt tggtcggtgg tgccgggatt tgtgggcgtg ggctatggcc aggccttcgg 661 caccatctgc atcatctcgt actattcctc gctgttggcg ctgaccctct actatctctt 721 tgtgtccttc caatcggaat tgccgtggtc ctactgtcgc gatgagtgga ccaattgcgt 781 gaactcgagg ccgcaggagt atgtggacaa tctgcttacg ggcgtatcct tggccaatga 841 atcggccaga aatctcagcg gcattgtggc caacgatgag acagagaaac tccagagcag 901 ctccgaactc tatttcctga atgtagtgat caaggagaag ctggacatct cggacggcgt 961 tggtgatccc gattggaagc tgacacttgc cctgttcgtc gcctgggtgg tcatctttct 1021 ggtgatcatg cgaggggtga agagttccgg caaggcggcc tacttcctgg ccctgttccc 1081 ctacgtggtg ctcttcgtcc tgctgatccg tgccgttacc ttggagggag cacgcgatgg 1141 cattctgttc tttctggagc cacagtgggg tgaactcttg aaccccaccg tttggaagga 1201 ggccgttgtg cagtgcttct tctcgctggc cgtgggctcc ggacccatta tcatgttcgc 1261 ctcgtacaat cgattcgatc acggaatcta tagggatgcc atgatcgtaa ccacactgga 1321 cacgctgacc agcctcctgg gaggtataac gatatttgcg atcttgggca atctggcgca 1381 caatctgcag atcgaaaaca tcagagatgt ggtgcgaagt ggcacgggat tggccttcat 1441 ctcgtatccg gatgccatat caaagttcca ggcggtgccg cagcttttct cggttctgtt 1501 cttcttcatg ctgttcgtcc tgggcattgg atcaattgtg gccctgcaga gcaccattgt 1561 caccatcatt tgcgatcagt tcaagggatg gaagtactgg aaggtggcac tgaccacctc 1621 tgtgtgcggt ttccttatgg gtttggtcta cgttacaccg ggcggacagt ggatcctcac 1681 tttggtggac ttctatggcg gaacctatgt ggtcttcatc ttggccattt tcgaactggc 1741 tggcatcgtg tgggtttatg gtctgcaaaa cttttgcgat gacatcgagt ttatgtgcaa 1801 tcgccgagtt tcactgtact ggcgagtatg ctggtccttc ttcacgcccg tcatgatgat 1861 catcatattc atatactcga tggtcaccat cgaaccgatc aaatatagcg aactgtactt 1921 ccccgaagcc gccaacattg ccggctggct gctgttcgcc atcggtgctg cccagtttcc 1981 actgtggggt ctttggtaca tctcgcgcca tccacaaggc acctactgga agtctctgaa 2041 ggcctcgctg aagcccagcg atcgctgggg tcctgccaat ccggaaattc ggcgcgaatg 2101 ggtgatcttc aagaatcaga aggcagccca aagagccacg cagaaggata cgtcgaaact 2161 tggtttcttc tggcgcaaag tggccaattt ctgtggcagc aacaagtaaa caaagtccgc 2221 gtggagcggg gagcagaggt ggggatatcg tggggatatc agagattacg actaaccata 2281 accacttgtt atttatatac gccattgtca gcctctatga agccatcaca aatgcgaagc 2341 acaatccttc gaccgaatat atcgcatgta tcaataaata aatagccgtt tttttttttt 2401 aattatattt ttgttattct acgtacaaac ttcatttatg aatgtgataa tattgagcag 2461 aaaaaaaaaa taaattatta ttatc