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LOCUS NM_131989 2319 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_131989 VERSION NM_131989.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2319) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2319) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2319) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2319) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2319) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2319) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2319) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2319) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2319) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2319) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2319) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2319) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2319) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2319) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2319) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2319) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2319) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2319) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2319) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2319) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2319) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2319) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2319) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_131989.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2319 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2319 /gene="XRCC1" /locus_tag="Dmel_CG4208" /gene_synonym="4208; CG4208; Dmel\CG4208; Xrcc1" /map="4F5-4F5" /db_xref="FLYBASE:FBgn0026751" /db_xref="GeneID:31451" CDS 227..2071 /gene="XRCC1" /locus_tag="Dmel_CG4208" /gene_synonym="4208; CG4208; Dmel\CG4208; Xrcc1" /note="CG4208 gene product from transcript CG4208-RA; CG4208-PA; XRCC1-PA" /codon_start=1 /product="XRCC1" /protein_id="NP_572217.1" /db_xref="FLYBASE:FBpp0070730" /db_xref="GeneID:31451" /db_xref="FLYBASE:FBgn0026751" /translation="MPIALFKSVREVSSEDAVHVAANLLKENAGKKWRTKAPGEKSAY VVLEFEEPQQITGIDIGNEHAAFIEVLVSRTGCQADDFRELLLSSSFMTPIESKNSSN PNRVRCFSSTSLAESALPEKWKLLQIVCTQPFNRHVPYGLSFVKVHVVAAAAPKVKSL VPQGVMQFGTFKLREESPDSETDNQVNRFHSWKKQTQHKSPAISATSTAAAIRDAGST ALRRLSAGKVSSLAASPKTSTSPSPVLNALRSVSPTPLDAKPLDRNRASLLFGDDDED VKDAEVNAKKQRLSKHLEADKDRRRLEQEKERESRKKKSSRHSLDKSISKEDKPPAKE HNSSSREKSTAKEEKEQLRKEERSHSKEEKSRRKEKSKHDHRSSDTSNSKESSRPTAQ KRHSSPTAVAVTPAKKQKIVDTAIQYRPLNQLLKGVVLVISGIQNPDRADLRSKAVAL GAKYKADWGSGCTHLICAFKNTPKYNQVKGKGKIVTRSWIEKCYELKKYLPWRRYALD TNDIGQPESDEELCDEATRPRRDSSKDDVAMLEDSKLTALADQNDVEMNPDALSGIDT EDELQRVAEENKTKKAKLRTTVKTKSQDIYEVSTDEEDYLELKKKQID" misc_feature 227..658 /gene="XRCC1" /locus_tag="Dmel_CG4208" /gene_synonym="4208; CG4208; Dmel\CG4208; Xrcc1" /note="XRCC1 N terminal domain; Region: XRCC1_N; pfam01834" /db_xref="CDD:460356" misc_feature 1079..>1363 /gene="XRCC1" /locus_tag="Dmel_CG4208" /gene_synonym="4208; CG4208; Dmel\CG4208; Xrcc1" /note="U2 snRNP auxilliary factor, large subunit, splicing factor; Region: U2AF_lg; TIGR01642" /db_xref="CDD:273727" misc_feature 1505..1741 /gene="XRCC1" /locus_tag="Dmel_CG4208" /gene_synonym="4208; CG4208; Dmel\CG4208; Xrcc1" /note="First (central) BRCT domain in X-ray repair cross-complementing protein 1 (XRCC1) and similar proteins; Region: BRCT_XRCC1_rpt1; cd17725" /db_xref="CDD:349357" ORIGIN 1 caatacaggt tttatttttg aaatagttgg ttaagcaaaa tcagcataat tcaccgccca 61 tcatcaaaag ataaaagaaa taaacaaaca ttctagcgca catggcaaca catgcaaccg 121 acgcaattcc ctttcgacaa tcagtttaat cgcaggcgca actgtcggca aagcaatttg 181 ccgcaaaatc atcggcgtct cagtgtaaat tcatgcgact tgcgaaatgc caattgcgct 241 tttcaagtcc gtacgcgaag tgagcagcga agatgcggtg cacgtagcgg cgaatctgct 301 caaggaaaac gccggcaaga agtggcgaac caaggcgccg ggagagaaat ccgcatacgt 361 tgtgctggag ttcgaggagc cgcaacagat tacgggcatc gatattggca acgaacatgc 421 cgccttcatc gaggtgctgg tcagtcgaac aggctgccag gcggacgatt tccgcgagct 481 gctgctatcc agttcgttta tgacgcccat cgagagcaag aattccagca atccaaatcg 541 cgttcgctgt ttcagtagca cttcgctggc ggagagtgca ctgccggaga agtggaagct 601 gcttcagata gtctgcacac agcccttcaa tcgtcatgtg ccatacgggc tctcattcgt 661 caaggtgcat gtagtggctg ctgcggcgcc taaggtcaaa tccctagtgc cgcagggtgt 721 tatgcaattc gggaccttta agctgcgcga ggagtcgccg gactcggaaa cggacaatca 781 agtgaacaga tttcacagct ggaagaagca gacgcagcac aagtcgcccg cgatcagtgc 841 gacctccaca gcagcggcca ttcgggacgc cggctccacg gccctgcgaa ggctgagcgc 901 tggcaaggtt tctagcctgg ctgcatcgcc caaaacctcg acgtcgccat caccagttct 961 caatgctctg cgatcggttt ctccgacgcc attggatgcc aagcccctgg atcgcaatcg 1021 agcttcactc ttgttcggcg acgatgatga ggacgtgaag gacgctgagg tcaatgcaaa 1081 gaaacaacgg ctgagcaagc atctggaggc ggacaaggat cgacggcgat tggagcagga 1141 aaaggagagg gagagcagaa agaaaaagtc aagcaggcac tccttggata agtcaatcag 1201 caaagaagac aaaccaccgg caaaggagca caattcgtcc tccagagaaa aatccacagc 1261 caaagaagag aaagagcaat tacgaaaaga ggaaagatcg cattcgaagg aggagaagtc 1321 caggaggaag gagaaatcta agcatgatca cagatcttcg gacacctcga attccaagga 1381 aagttcgcgc ccaactgcgc aaaagcgaca ttcatctccc accgcagtcg cagtaacgcc 1441 cgccaaaaag caaaagatcg tggacacagc gattcaatac cgtcccctta atcagttact 1501 caagggtgtg gtcctggtca tcagtggcat acagaatccc gatcgtgcag acttgcgttc 1561 gaaagcggtc gccttgggag ccaagtataa ggctgattgg ggatcaggat gtacccatct 1621 gatatgcgca ttcaaaaaca caccgaaata caatcaagtg aagggcaagg gcaagattgt 1681 gacacgcagt tggatcgaga aatgttatga gctgaagaag tacctgccat ggcgacgtta 1741 cgccctggat accaatgaca ttggccagcc ggagagcgat gaggagcttt gcgatgaggc 1801 gacgaggcca cggcgcgatt ccagcaagga tgatgtggca atgctagagg atagcaagct 1861 aacagctcta gcggatcaga atgatgtgga aatgaatcca gatgccttat cgggcattga 1921 tacggaagat gaactgcagc gcgtggctga ggaaaacaaa acgaagaaag ccaaactaag 1981 gactacagta aagacgaaat cgcaagatat atacgaagtt agtaccgatg aagaggatta 2041 tctggagcta aagaagaaac aaatcgatta ggtgccattt ctaacctcat ctcatatttt 2101 gtatacgact ttattactta aattgcttgt aatgtgcaag tatcatattt ttgtactttg 2161 ttaatcgaat atgctcgtta tcaaaaattc gacaaattca aaataagtga ttagtttgga 2221 ccattttgaa aaaagagccc aaggaataaa tattgatatt ataatagatc tatcgcatgt 2281 tcatttaaaa aaaactatca aataaaccac ctctgggct