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LOCUS NM_131979 2124 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_131979 VERSION NM_131979.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2124) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2124) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2124) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2124) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2124) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2124) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2124) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2124) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2124) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2124) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2124) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2124) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2124) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2124) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2124) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2124) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2124) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2124) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2124) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2124) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2124) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2124) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2124) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_131979.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2124 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2124 /gene="CG5062" /locus_tag="Dmel_CG5062" /gene_synonym="BcDNA:AT13663; Dmel\CG5062; FBgn0029747" /map="4F2-4F2" /db_xref="FLYBASE:FBgn0029747" /db_xref="GeneID:31435" CDS 190..1935 /gene="CG5062" /locus_tag="Dmel_CG5062" /gene_synonym="BcDNA:AT13663; Dmel\CG5062; FBgn0029747" /note="CG5062 gene product from transcript CG5062-RA; CG5062-PA" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_572207.1" /db_xref="FLYBASE:FBpp0070726" /db_xref="GeneID:31435" /db_xref="FLYBASE:FBgn0029747" /translation="MPMVMPCRSRAAMKLHPDCYDRLKKPIYLETPPLSTVEEEPLCG VRRDRPVKPKVQRRPLPPGTRLPNPVAVPGQKITRSAVGGGKAPPRARKYDGAKATFF HIKGQSWESKGYAELSQCELDRMRASRPRTTEERRAEQDRRMEEQQYHTAEAERMRNY FHDIDEQRREKEREAQKRDDDEADEDVNEDRRAEAKRLQVLHRALDAKYESDVRVKDA TRAISEAKCSAMWTAQIQERKLLNRIQLDHDEEMARKNRDYNNAKWGTVEQQDQAEEE RRRQFGNAVREQITDREKLRFLAQDRLRLEARDLRAAVDEYKKAELAEGEMKSRRKLA YRDELNKYTKLHRNFVRMMCEQDQRDENRAYEYLKLKEQQLKQQRAEREAIAADEKRK RDVLFAVGQKILDAKDNREEMHFLAEHERLERKYRENERKAAEKERKMAAELKRANME QMEHLSQMKACFYVQRERELKEMIEYRKKHEEQMKREAEEQAIKKACLRSSVSCQIEE REKARRRELEEEHLAFERERAAEAQRQKEIDTVITVKLDDLQKRGCLPNLAVQSLKGR VANAGNKKKLGAEFT" misc_feature <541..>864 /gene="CG5062" /locus_tag="Dmel_CG5062" /gene_synonym="BcDNA:AT13663; Dmel\CG5062; FBgn0029747" /note="Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; Region: YqiK; COG2268" /db_xref="CDD:441869" misc_feature 811..1833 /gene="CG5062" /locus_tag="Dmel_CG5062" /gene_synonym="BcDNA:AT13663; Dmel\CG5062; FBgn0029747" /note="Trichohyalin-plectin-homology domain; Region: TPH; pfam13868" /db_xref="CDD:464007" ORIGIN 1 cgaaatatac gaaacaagca aacaaaacaa gagcctccga gcaaataaca caaacagaca 61 cgccaacaaa ccgaacaaag gaacaaactc aatagctaag cgagaaatct gctattgcgt 121 tttaccccac acccctctgg ccatttgcaa tttcaaacgc gatatacata tagaatagaa 181 ttcgtcaaga tgccaatggt gatgccatgt cgttcgcgag ctgcgatgaa actgcacccg 241 gattgctatg atcgacttaa gaagccgatt tatctggaaa cgccaccatt atcgaccgtc 301 gaagaggagc cactatgtgg cgtacgccgt gatagacccg taaagccaaa ggttcagagg 361 cgaccattac cgcccggcac acgtctaccg aatccagtag ccgtgcctgg acagaagatc 421 acacgttcgg cggtgggtgg cggtaaggcg ccaccgcgag cccgaaaata cgacggtgcc 481 aaggccacgt tctttcacat caagggtcaa tcatgggaat ccaagggcta tgcggagctc 541 tcacagtgcg aactggatcg catgcgggca tcgaggccgc gtaccaccga ggagcgtcgc 601 gcggaacagg atcgccggat ggaggagcag caatatcata cagccgaagc ggaacgtatg 661 cgtaactatt tccacgacat tgatgagcag cgcagggaga aggagcgcga ggcccagaag 721 agggacgatg acgaggccga tgaggatgtc aacgaggatc ggcgtgcgga ggccaaacga 781 ttgcaggtac tacaccgcgc cttggatgcc aaatacgagt cagatgtgcg agttaaggat 841 gccacgcgtg cgatatccga ggccaaatgc agtgccatgt ggacggctca gatacaggaa 901 aggaagctac tcaatcgcat tcaactcgat catgacgagg agatggctcg caagaatcgc 961 gactacaaca atgccaaatg gggcacggtg gagcagcaag atcaggccga agaggagagg 1021 cgccggcaat ttggcaacgc agtgcgtgaa caaatcactg atcgcgaaaa gttacgtttc 1081 ctggcccagg atcgtctgcg attggaggcg cgagacttgc gtgccgccgt cgatgagtat 1141 aaaaaggctg aattggcaga gggcgagatg aaatcgcgcc gtaagctggc ctatcgggat 1201 gaattgaata agtatacgaa attgcatcgc aatttcgtac ggatgatgtg cgaacaggat 1261 caaagagatg agaacagggc ctacgagtat ctaaagctca aggagcagca attgaaacaa 1321 cagcgagcgg aacgcgaagc catcgcggcg gatgagaaac gcaaacggga tgttctcttt 1381 gcagtcggcc aaaagattct cgatgctaag gataatcgcg aggagatgca tttcctggcg 1441 gaacacgaac gcctcgaacg aaagtacaga gaaaacgaac gtaaggcagc cgaaaaggaa 1501 cgcaaaatgg ccgccgaact caagcgtgcc aatatggagc aaatggagca tcttagccaa 1561 atgaaggcct gcttctatgt gcaacgtgaa cgcgaactaa aggagatgat cgagtatcga 1621 aagaagcacg aggagcaaat gaagcgcgag gccgaggagc aggccatcaa aaaggcctgt 1681 ctgcgctcca gtgtctcgtg ccaaatcgaa gaacgggaga aggctcgtcg ccgcgaactg 1741 gaggaggaac acttggcctt cgaaagggag cgggcagctg aggcgcagcg gcaaaaggaa 1801 atcgatacgg tgatcacagt caaactggat gatctacaaa agcgcggatg tctgcccaat 1861 ttggcggtgc aatcgctaaa gggtcgtgtc gccaatgctg gcaacaaaaa gaagctgggc 1921 gctgaattca cttagatagt tatattttct aaaaatccat ccatagacag acagcatcaa 1981 acacgcgcac acactcactc ccacacacac acacacacac acacacagac acacacatga 2041 actcaagttg acaatggcat agatgatgac ttttcgagct tggcggaatt aaaacttgca 2101 gcacatataa aatgtacata atgt