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LOCUS NM_131971 3387 bp mRNA linear INV 26-DEC-2023 A (CG44774), mRNA. ACCESSION NM_131971 VERSION NM_131971.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3387) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3387) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3387) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3387) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3387) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3387) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3387) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3387) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3387) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3387) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3387) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3387) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3387) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3387) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3387) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3387) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3387) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3387) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3387) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3387) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3387) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3387) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3387) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_131971.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3387 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3387 /gene="CG44774" /locus_tag="Dmel_CG44774" /old_locus_tag="Dmel_CG4068" /old_locus_tag="Dmel_CR43698" /old_locus_tag="Dmel_CR43699" /gene_synonym="CG4068; CR43698; CR43699; Dmel\CG44774; hp-CG4068" /map="4D6-4D7" /db_xref="FLYBASE:FBgn0266000" /db_xref="GeneID:31424" CDS 602..2467 /gene="CG44774" /locus_tag="Dmel_CG44774" /old_locus_tag="Dmel_CG4068" /old_locus_tag="Dmel_CR43698" /old_locus_tag="Dmel_CR43699" /gene_synonym="CG4068; CR43698; CR43699; Dmel\CG44774; hp-CG4068" /note="CG44774 gene product from transcript CG44774-RA; CG44774-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_572199.2" /db_xref="FLYBASE:FBpp0309834" /db_xref="GeneID:31424" /db_xref="FLYBASE:FBgn0266000" /translation="MFNFHKPRVYRSADGCCICRAKSSSSRFTASRKYEKESMQCFNL NEPRNGEICNACVLLVKRYKRLPIGSKRHWGHVVDARAGPGTKSMAKQKKRDNADAKS RAANGSGNSFLPEKFAKNRKSKERAATEAAAARPSSLSLSTSAVNRPSSTSPTSDHQH SDSNESYDDEQTLPANKPYQTRKRTAAAALATANESKEPNNKRPKLTGSYRRRQLVPQ KNRRSVDNIPFFEENDLVRLEVCCGVVFQSLSLGSTYYIIDPELYKPCAKHQRIRHQQ MQLQLQHQQAEAVNATPTPTTTPTVTTNSSPHTTQVQSKVPTIGPLKKHHLFCKRQSG SFPQGEIHSISPIPMSKTETDGQPLSPKPHSTLSLILKPTVQMQQQQPQSQAQSQVVS VGAASPSSLSSLSNCSTSSSVATKFNDNSSDSGFDEHVLERKSVSPPTDECKLRGTTG GRVQLILVSGLPLAGQSQNLMLAGNEFTARIVQQREAGIAAATAAGAGTGTPSTGATP LKINVLGGSQGNSNKMRAIFNSASSIQHENGVTTIVPASSLAASNQTAAMNAIAPSTV TITPSSVGKKVTVPNPKFILLKPAKFVGPASANEVNTATLTAEPHAPPPPQAKIV" misc_feature 605..1408 /gene="CG44774" /locus_tag="Dmel_CG44774" /old_locus_tag="Dmel_CG4068" /old_locus_tag="Dmel_CR43698" /old_locus_tag="Dmel_CR43699" /gene_synonym="CG4068; CR43698; CR43699; Dmel\CG44774; hp-CG4068" /note="Protein Family FAM60A; Region: FAM60A; pfam15396" /db_xref="CDD:464703" ORIGIN 1 atcattttgc tttgtgttgt tgctggcgtg cggacgtgtt ttagtttttc tccgccgctt 61 tcctttgaat ttgaaaatat aaaagtgatt taaattgttg ctaatgaaat agcaataaga 121 gtgttttttc atttaagcac aaatgcagcc agctacagtg aagcctggac aatggatgtt 181 ggcaatgcac gcgctcagaa caacgggtgc aaagggaaaa agcgcgcaca aataacacta 241 gcacaataac agtgaacacc gtcgcagcac acaccaaaca cagaaacccg aattgccact 301 caaaacactt tccaaaaaca aagaagaaac atcattttaa atcaagcaag gaaagcaaaa 361 aacattaaaa gcgtaaaaaa aaatagaaaa aaagcattaa aagcgtaaaa aaaggaaaaa 421 aaaaaaaaaa acaaaacatt aaaagcgtca aaaaaaaaaa agaggaaaaa aacattaaaa 481 gcgtaaaaaa gagagaaaaa aaagaacagg aaaatatagt catcgtaaat cattgtgaaa 541 tctccacgga acattgaaaa cccaaatatc aaaaccacaa acatactcca ataacaaagc 601 catgttcaat tttcataagc cacgcgtcta ccgctctgcg gatggatgtt gcatttgccg 661 ggccaagtcg agcagctcgc gcttcaccgc ctcccgcaag tacgaaaagg agtcgatgca 721 gtgctttaat cttaacgagc ctcgaaatgg tgaaatctgc aacgcctgcg tccttttggt 781 caagcgctac aagcgactac ccataggtag taagcgtcac tggggtcatg tggtggatgc 841 ccgtgctgga cccggcacca agtccatggc caaacagaag aagcgcgaca acgcagacgc 901 gaagagcagg gccgccaatg gcagtggcaa ctcattcctg cccgagaagt tcgccaagaa 961 ccgcaagagc aaggagagag cggcgactga agcagcagca gcaagaccat catcattatc 1021 attatcgacc agtgctgtaa atcgacctag cagcacttca cccacctcgg atcatcagca 1081 cagcgattcg aatgagagct acgatgatga gcagacgctg ccggcaaata aaccatatca 1141 aacgcgcaag cgaaccgcgg ctgccgcact agcgactgcc aacgaatcga aggagcccaa 1201 caacaaacgt ccgaagttaa ccggcagcta ccgacgtcgt cagctggtgc cacaaaagaa 1261 tcgtcggtcc gtcgacaata tccccttctt cgaggaaaat gatctcgttc gcctggaggt 1321 ctgttgcggt gtggtcttcc agagtttatc cctcggcagc acttactaca tcatcgatcc 1381 ggagctgtac aaaccgtgtg cgaagcacca gcgcatacgc caccagcaga tgcagcttca 1441 gctgcaacat cagcaggcgg aggcggtaaa tgccactcca acccccacga ccactccaac 1501 ggtcacgacc aactcatcgc cacacaccac tcaagttcaa agtaaggtgc caacgattgg 1561 gccacttaag aagcatcatt tgttctgcaa gcgacaatcg gggtcatttc cgcaaggtga 1621 aatccatagc ataagtccaa ttccaatgag caagactgaa acggacggcc aaccactgtc 1681 gccgaagcca cattccactc tgtccctgat cctcaagccc accgtccaaa tgcaacaaca 1741 gcaaccacag tcgcaggccc agagccaagt ggtctccgtg ggcgctgcgt cgccctcgtc 1801 gctgtcctcc ttgtccaact gctccacctc gtcctcggtg gccaccaagt tcaacgacaa 1861 ttcctcggat tcgggattcg atgagcatgt gctagagcgc aagtcggtca gcccaccaac 1921 ggacgagtgc aaactgcgcg gaaccacggg tggcagggtg cagctaatcc tagtcagcgg 1981 cctgcctctg gctggacaat ctcagaatct gatgctggcg ggcaacgagt ttacggcacg 2041 tattgtgcag caaagagaag ccggaattgc agctgcaacc gcagccggag ccggaaccgg 2101 tactccatcg acaggagcaa ccccactcaa aatcaacgta cttggcggat ctcagggcaa 2161 tagcaataaa atgcgtgcta tattcaatag cgccagcagc attcagcatg agaacggcgt 2221 gaccaccatt gtgccagcct cctcgttggc agccagcaat caaacagctg ccatgaacgc 2281 aattgcgccg agcacggtga ctataacgcc gtcatcggtg ggcaaaaagg tgacggtgcc 2341 aaatcccaag tttatcctgc tgaagccagc caaatttgtg ggaccagcat cggcaaacga 2401 ggtaaacaca gcgactctga cggcggaacc acatgctcct ccccctccac aagccaaaat 2461 cgtataggcg attgaaaacg aaagagagag agatagatag gagatgtcta gcgtctcgca 2521 gggaatatag taaccaccct gttacgtttg ttatacacta agctatttaa cggcgaccga 2581 aagccaagct cccttcctta gccgcaggtt ccatatcatt caagagtaat atttaacatt 2641 tcaaggaaca ccttagccta gacgttactt tagcctagac tagagcactg aactacagta 2701 tgggcgaatg agtccacgca aaactcacac ccacacagag ccatacaaat tgtaacaatt 2761 attagtgtgt taattgttta atgtagcgcc ccggtagcct gtagtttgac tccaacaagt 2821 tcgctcctgg cgcttcacag gcgctggaaa atcttaaccg ccggaagtca cttccgctgg 2881 ctttgatttt ccagcgtcag tcaagcggaa ggagggactt gtttgagtcc aactacagga 2941 tactgggggg cccttaagaa cagaatgggg aatgagtcca cgcaaaacac acacccacac 3001 acacacagaa ccatacaaat tgtaaccatt atttgagtgt taattgttga ctgtagcgcc 3061 ctggtagcct gtagtttgac tccaacaagt tcgctcctgg cgcttcacag gcgctggaaa 3121 atcttaaccg ccggaagtca cttccgctgg ctttgatttt ccagcgtcag tcaagcggaa 3181 ggagggactt gtttgagtcc aactacagga tactgggggg cccttaagaa cagaatgggg 3241 aatgagtcca cgcaaaacac acacccacac acacacagaa ccatacaaat tgtaaccatt 3301 atttgagtgt taattgttga ctgtagcgcc ctggtagcct gtagtttgac tccaacaagt 3361 tcgctcctgg cgcttcacag gcgctgg