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LOCUS NM_131969 2723 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_131969 VERSION NM_131969.5 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2723) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2723) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2723) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2723) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2723) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2723) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2723) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2723) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2723) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2723) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2723) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2723) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2723) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2723) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2723) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2723) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2723) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2723) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2723) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2723) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2723) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2723) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2723) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_131969.4. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2723 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2723 /gene="CG4041" /locus_tag="Dmel_CG4041" /gene_synonym="Dmel\CG4041" /map="4D5-4D6" /db_xref="FLYBASE:FBgn0029736" /db_xref="GeneID:31422" CDS 126..2585 /gene="CG4041" /locus_tag="Dmel_CG4041" /gene_synonym="Dmel\CG4041" /note="CG4041 gene product from transcript CG4041-RB; CG4041-PB" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_572197.4" /db_xref="FLYBASE:FBpp0290220" /db_xref="GeneID:31422" /db_xref="FLYBASE:FBgn0029736" /translation="MGTRERERECRLCAVTFFAKLHPGDVCGSNGLPLTPNSIAILGR AQKLKELQDEHLCQYLDVIRGKHERTIVVSEYLGLSLEDYAMRHPPLAIAQILRIFYQ VACGINVLSRHHLVAHNVEPKHILLSSDGQRVKLFNYGLHHMTKGGAYVPFPIGNIRY MAPERLLGLNGNVKSDVWSLALVMVELILQIELWPKLKLSNVVRKILAFGKSNGALEK IAREHQCHERYVQMDQRLRQLLESCLSVLPKRRPLPGELLEHPIFEEVLLDLKKQKMQ PLSPETEHLPLLLRCPLSQIYHLWQLAGGDVQAELKKEGLIRSEAPILGLPQIVRLSG ASVCPGRSQAQLMDDRVVPLRLKALLQRLSGLPAAVYFPLLHSPRFPAHFARELQELP LVIREKDIEYQFQRVRLFARLLQGYPHTAEQLQREAAVDVPPLLRGPIWAALLEVVPN GSYAKIDKFTSTSTDRQIEVDIPRCHQYDELLSSPDGHRKLRRLLKAWVTAHPQYVYW QGLDSLTAPFLYLNFNNEELAFLSLFKFIPKYLQWFFLKDNSAVIKEYLSKFSQLTAF HEPLLAQHLASISFIPELFAIPWFLTMFSHVFPLHKILHLWDKLMLGDSSYPLFIGIA ILRQLRSTLLTSGFNECILLFSDLPDIVMDGCVLESQKMYEATPKSITHRQHALRLQP PQALDIGVADVELKHLQQEQCPRISAKDVQFLLDNSPAELALIDLRSVVEFGRVHVPH SINIPFATVQLGEQRLEALQVPQLEAQLRGKIVVCVSNIHQHSVEFSHFLVACGVQRT CILHKGFNVLHSIEPNILISN" misc_feature 267..914 /gene="CG4041" /locus_tag="Dmel_CG4041" /gene_synonym="Dmel\CG4041" /note="The protein kinase superfamily is mainly composed of the catalytic domains of serine/threonine-specific and tyrosine-specific protein kinases. It also includes RIO kinases, which are atypical serine protein kinases, aminoglycoside phosphotransferases; Region: Protein Kinases, catalytic domain; cl21453" /db_xref="CDD:473864" misc_feature 1419..2027 /gene="CG4041" /locus_tag="Dmel_CG4041" /gene_synonym="Dmel\CG4041" /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Region: TBC; smart00164" /db_xref="CDD:214540" misc_feature 2241..2555 /gene="CG4041" /locus_tag="Dmel_CG4041" /gene_synonym="Dmel\CG4041" /note="Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site...; Region: RHOD_Kc; cd01525" /db_xref="CDD:238783" misc_feature 2454..2456 /gene="CG4041" /locus_tag="Dmel_CG4041" /gene_synonym="Dmel\CG4041" /note="active site residue [active]" /db_xref="CDD:238783" ORIGIN 1 ggcaacgtga acagctgttt ttgcattccg ctcgcaaaaa aaaaagaaaa aaaaatatta 61 aattgttgct gatgctggcg tgaagtccaa ggaaatcgct gtgatttgca aatcgcatcg 121 agatcatggg cacgcgggag cgcgaaaggg agtgccgcct gtgcgcggtc accttcttcg 181 cgaaactgca tcccggcgac gtgtgcggca gcaacggcct gcccctaacg cccaactcga 241 ttgcgatcct ggggcgtgcc cagaaactga aggagctgca ggacgagcac ctgtgccagt 301 acctggatgt gatccgcggc aaacacgagc gcaccattgt ggtttcggag tatctgggac 361 tctcactgga ggactacgcc atgcgtcatc caccgctggc cattgcccag atactgagaa 421 tcttctacca ggtggcgtgc ggcatcaatg tgctgagtcg acaccatctg gtggcccaca 481 acgtggagcc caagcacatt ctactctcca gcgatgggca gcgggtgaag ctcttcaact 541 acgggctgca tcacatgacc aagggcggtg cctatgtgcc ctttcccatt ggcaacattc 601 gctacatggc acccgaacga ctgctcggtc tgaatggcaa tgtgaagagc gacgtttggt 661 cgctggccct ggtaatggtg gagctaatat tgcagatcga gctgtggccg aagctcaagc 721 tctcgaatgt ggttagaaag atcctggcct ttggcaagag caacggggcg ttggagaaga 781 ttgcgcgaga gcaccagtgt cacgagcgct atgtgcagat ggatcagcgc ctgcgacagc 841 tgctggagag ctgtttaagt gtactgccca agaggagacc actgccaggt gagctcttgg 901 aacatcccat tttcgaggaa gtcctattgg atttgaagaa acagaagatg cagccactga 961 gcccagaaac cgaacattta ccgctgctgc tgcgatgtcc cttgtcgcag atctaccacc 1021 tgtggcaact ggccggcgga gatgtgcagg cggagctgaa aaaggagggc ctcatccgga 1081 gtgaggcacc cattttgggt ctgccacaaa tcgttcgcct gagcggcgcc agcgtttgtc 1141 ccggccgaag ccaggcgcag ctgatggacg atcgcgtggt gccgctgcgc ctgaaggcgc 1201 tgctccagcg actgagtggc ctgccggccg cagtctactt tcccctgctc cactcgccgc 1261 gttttcccgc ccactttgcc cgcgaattgc aggaactgcc gctggtgatc cgcgaaaagg 1321 acatcgagta tcagtttcag cgcgtgcgac tttttgcgcg cctgctccag ggctatccgc 1381 atacggcgga gcagctgcag cgcgaggcag ccgtggatgt gccgccgcta ctgaggggtc 1441 ccatttgggc cgccctgctg gaggttgtgc ccaatggcag ttacgcgaag atcgacaagt 1501 ttacgtctac gagcacggat cggcagatcg aggtggatat accgcgctgc catcagtacg 1561 atgagctgct ctcctcgccg gatggccacc gcaagctgag gcggctgctc aaggcctggg 1621 tcaccgccca tccgcagtac gtctactggc agggactgga ctcactgacg gcaccgtttc 1681 tctatctcaa ctttaacaat gaagagttgg ccttcctcag cttgttcaag ttcattccaa 1741 agtatctgca atggttcttt ctcaaggata attcggcggt gatcaaggag tacctgagca 1801 agttctccca gctgactgcc ttccatgagc cgcttctcgc tcagcatttg gccagcatta 1861 gctttatacc cgagttgttt gccatcccgt ggttcctaac catgttctcg catgtattcc 1921 cgctgcacaa gatcctgcat ttgtgggata aactcatgct gggcgatagt tcgtatccgc 1981 tgttcattgg catcgccata ttgcgccagc tgagaagcac gctgctcacc tccggtttca 2041 acgagtgcat cctgctcttc tccgacctgc ccgatatcgt gatggatggc tgtgtgctgg 2101 agtcacagaa gatgtacgaa gccacaccga agagtattac tcatcgccag cacgcgttgc 2161 gcctccagcc gccacaggcg ttggacattg gcgtggcgga tgtcgagctg aagcacctgc 2221 aacaggagca gtgcccccgg atcagcgcca aggatgtgca attcctgttg gacaattcgc 2281 cagcggagct ggccctcatc gatttgcgca gtgtagtcga gttcggacgc gtccatgtgc 2341 cgcatagcat caacataccg ttcgccaccg tccagttggg tgaacagcga ttggaggccc 2401 tgcaggtgcc ccaattggag gcgcagctcc gcggcaagat cgtcgtctgc gtgagcaata 2461 tccatcagca ctccgtggag ttctcgcact ttctggtggc ctgcggtgtc cagcgcacct 2521 gtatccttca caaaggattc aacgtcctgc actccatcga gccaaatata ctcatctcga 2581 attgagctcc cgacttgctg atcctttctt gttggcctca tcgcttctgc tcgtctacgc 2641 taagctcaat gtacatttat tatctatctt ttttaaacgg attgcatttg caaataaact 2701 atatatacat atatgtatta tat