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LOCUS NM_131946 3292 bp mRNA linear INV 26-DEC-2023 (Alms1b), mRNA. ACCESSION NM_131946 VERSION NM_131946.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3292) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3292) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3292) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3292) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3292) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3292) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3292) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3292) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3292) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3292) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3292) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3292) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3292) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3292) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3292) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3292) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3292) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3292) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3292) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3292) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3292) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3292) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3292) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 26, 2006 this sequence version replaced NM_131946.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3292 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3292 /gene="Alms1b" /locus_tag="Dmel_CG12184" /gene_synonym="alms1b; CG12184; Dmel\CG12184; EG:66A1.3; GH15731P" /note="Alstrom syndrome 1b" /map="4C10-4C10" /db_xref="FLYBASE:FBgn0025387" /db_xref="GeneID:31392" CDS 54..2999 /gene="Alms1b" /locus_tag="Dmel_CG12184" /gene_synonym="alms1b; CG12184; Dmel\CG12184; EG:66A1.3; GH15731P" /note="CG12184 gene product from transcript CG12184-RA; CG12184-PA; Alms1b-PA" /codon_start=1 /product="alstrom syndrome 1b, isoform A" /protein_id="NP_572174.3" /db_xref="FLYBASE:FBpp0070664" /db_xref="GeneID:31392" /db_xref="FLYBASE:FBgn0025387" /translation="MFKKFGSRDNRPAKLTRVHPPPGDYYISAMATDRELDRFMALSS TASSGASGSTQSCALGSVQPPGCASMEHEARPESGHRRRTKSSDHRSPDERGEAKEQL RELSVSPPPSKHNISQFTSPKSEVTQTKPNEYTIIPIVLASSPSFRSVAVTQTMSQSA GDIRRPIKSPQMQNKKTQTLESVHKSHKHTKKCQCKSRRQDSKVSSCQTDIHHPEREQ QEIQPLMRDQRKAKQRHEKDHQLEREQQGIQQLTRDQRKATKREKVREQERQYTAAQF EKIRGNRRHVSKENQQPENPVVNPSTGVTASSSTTSLDVGSGSRPRGVLDIGIELVCS LVKSRSLSQGQKKKLVRDIARRISCLELTESSTSSRSLSSSSKEQLKVPTGSLQQVAA TNTNQSNARSSSKAERIAPPVPAPRKRAAIGSSSPLPESVSYSGSTSGSGEVITQKTN IPNRNASTDADIEPLDLQDWLNPMTLSEIEFEERLKGGTDSERRRQLHWVKTEINRMQ EFKNLLESISLPSKSQKKANTESATAAQIPSSMRCMGDQKERPDKEYLLRQEMSAEAE SKEMENSETTTTPPPPVRIESVGVNVTNSDPSTLPAPPPTQPPPPPPHLNQRNLQNRK KMATPLLVSGSSTSGGGRSESVCSFVQQRQRQFCEHYENEQLEEFVLLQKQKLYQLRK QLNQQKDILIQRQQHCGQRTYVHQQHCPRRQQEAQDQHDEREQYMQMQYAQAAGAYAS GAVGNEAIYHQVVNPQGVASYVQATMVSTETQNEATATGGAGGSSITRCETTTRQYDD VACQRVRRGHKETRMNAERMQRQVRPRAISYVIQFTPTGSSEVIEKPPSLQDQLQLAR PEFCANAKQRKAILNEMQMIRNARRQELDNVLSQSTSMEALNRHLEQLPPAANTRVKL FTTREMKAITSKRCKNLPEVLAAQSRQEEEQRRRSNRLMRDAFNKRLKSRVASGNISQ RGNHLEKIE" misc_feature 2592..2960 /gene="Alms1b" /locus_tag="Dmel_CG12184" /gene_synonym="alms1b; CG12184; Dmel\CG12184; EG:66A1.3; GH15731P" /note="ALMS motif; Region: ALMS_motif; pfam15309" /db_xref="CDD:464634" ORIGIN 1 aatatagcag ggaaataaac tttttcgaca attagagcca agaaacagtc cgaatgttta 61 agaagtttgg ttcccgagat aacagaccgg cgaagttaac ccgcgttcat ccaccacccg 121 gggattatta tatcagcgca atggccacgg accgggaatt ggatcgattc atggcccttt 181 cgtcgacggc aagcagtgga gccagtggca gcacccaaag ttgtgccctg ggatcagtcc 241 agccgccagg atgtgcctcc atggaacatg aagcgcgacc agaatcaggc cacaggcgtc 301 gcacgaagag cagcgatcat cgttcacctg acgaacgggg ggaagcaaag gaacagctcc 361 gggaactgtc agtttcacca ccacccagta agcacaacat cagtcagttc acatcaccga 421 aatcggaagt aactcagacg aaaccgaatg aatacactat aattcctatt gtattggcca 481 gtagccccag ttttcgttcc gtagcagtta cccaaaccat gtcccaatcc gcgggggaca 541 ttcgcagacc tatcaagtcg ccccagatgc aaaacaaaaa aacccagaca ctagagtctg 601 tccataagtc acacaaacac acaaagaagt gccaatgtaa atccaggaga caggattcca 661 aagttagctc ttgtcagacg gacattcatc atccggaaag ggagcagcaa gaaattcagc 721 cactcatgag agaccaaagg aaagctaaac agcgccatga aaaggatcat caactggaaa 781 gggaacagca aggaattcag caactcacga gggaccaaag aaaagctaca aagcgcgaaa 841 aggtgcgcga gcaagagcga cagtacacgg cggctcagtt cgagaaaatt cggggcaata 901 ggcggcatgt gagcaaggag aaccagcagc ccgagaaccc tgtagtaaat ccctccaccg 961 gcgtcacagc ctcctcatca accacttcat tagacgttgg atccggtagt agaccgcgag 1021 gggtattgga tataggaatc gagttggtct gttctctggt aaaatctcgc agcctcagcc 1081 agggacagaa gaaaaaactc gtccgtgata tagccaggcg tatctcctgt ctggaactga 1141 ccgaatccag cactagttcg cgttccctga gcagcagcag caaggagcag ttgaaggtgc 1201 ctacaggttc tctgcagcaa gttgcggcca ccaatacgaa ccaatccaat gcgagaagct 1261 catccaaagc tgaacgtatt gctccaccag ttcccgctcc acgaaagcga gcagctatcg 1321 gatcatcttc gccactgcct gaaagcgtat cgtacagtgg ctcaaccagt ggctcaggcg 1381 aggtgatcac ccagaagaca aatataccga atcgcaatgc ctcaacggat gcagatattg 1441 agcctttgga tttgcaggat tggctgaatc ccatgaccct gagtgaaata gagttcgaag 1501 agcgtttgaa aggtggcacg gattcggagc gaaggaggca gctccactgg gtcaagacag 1561 agattaatcg catgcaggaa tttaaaaatc ttttggaaag tatcagtttg cccagcaagt 1621 cgcagaagaa agcaaacacg gaatctgcga cggctgcgca gattccaagt tccatgcgat 1681 gtatgggcga ccagaaggag cgaccggaca aggaatatct tctgcgacaa gaaatgtcag 1741 ctgaagcaga gagcaaagag atggaaaatt cggaaacaac aacaacaccg ccgcccccag 1801 tgagaattga atcggttgga gtgaatgtga ccaattctga tccttccaca ctgccagcac 1861 cgcccccgac acaaccacca ccaccacctc ctcaccttaa ccagcggaat ctgcagaacc 1921 gtaaaaagat ggccactcct ttacttgtct caggtagctc taccagtggc ggcggtcgca 1981 gtgaaagtgt ctgctccttt gtccagcaaa ggcagcgtca gttctgcgag cattatgaga 2041 acgagcagct tgaagagttt gtattgctcc agaaacagaa actttaccag ctgcggaaac 2101 agctgaacca gcaaaaagat attttgatac agaggcagca acattgtggt cagcggactt 2161 acgttcatca gcagcattgc ccgaggcgtc aacaggaagc acaggatcag cacgatgaac 2221 gagagcaata tatgcagatg cagtacgccc aggcggcggg tgcctatgca tccggcgcgg 2281 ttgggaatga agccatctac caccaggtgg tcaaccctca gggagtagct agctatgtgc 2341 aagcaacaat ggtgagcaca gagacacaaa atgaagcaac tgcaactggt ggagcaggag 2401 gctcgtccat caccagatgt gagaccacca ctcgtcagta cgatgatgtg gcatgtcagc 2461 gggtgcgaag ggggcacaag gagaccagga tgaatgcaga gcgtatgcaa cgccaagtgc 2521 gtccacgtgc tatatcctat gtcatccagt ttacgccgac gggcagcagt gaggtgattg 2581 agaaacctcc ctccctgcag gatcaactgc agctggctcg tcccgaattc tgtgccaatg 2641 ccaagcagcg caaggccata cttaatgaga tgcagatgat tcgcaatgct cggcgccagg 2701 agctggacaa tgttttgagc cagagtacca gcatggaggc gctgaacagg catctggagc 2761 agctgcctcc agcagccaat actcgagtta aattatttac caccagggaa atgaaggcga 2821 ttacctccaa acggtgcaaa aatttgccgg aagtgttggc cgcccaaagt cgccaggagg 2881 aggagcagag acgtcgctcc aatcgtttga tgcgcgatgc tttcaacaag cgcctcaaaa 2941 gtcgcgtggc cagcggaaat atatcgcagc gtggtaatca tctagagaag atcgaataag 3001 gatttcccca cagccaccga caccagttac cgacatcaac acccacagcc atggcaccca 3061 ccagttttag tttttcatta ttatgctttt gccactgcca agctttgtta tttttctata 3121 tattttaatc gatcacaatt gtttaagtcc agtccatacg taatgttaaa atttaatgta 3181 gccggccaat taactttaaa catagaaaat tatgttgatc tagcatttga ctaaatttgt 3241 aatgttttta aaagaaataa attgagaacg ggtcgacgat cgatttaaat ct