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LOCUS NM_131939 2954 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_131939 VERSION NM_131939.6 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2954) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2954) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2954) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2954) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2954) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2954) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2954) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2954) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2954) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2954) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2954) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2954) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2954) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2954) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2954) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2954) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2954) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2954) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2954) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2954) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2954) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2954) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2954) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_131939.5. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2954 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2954 /gene="Usf" /locus_tag="Dmel_CG17592" /gene_synonym="bHLHb13; CG17592; Dm Usf; Dmel\CG17592; DmUsf; dUSF; dUSF2" /map="4C7-4C7" /db_xref="FLYBASE:FBgn0029711" /db_xref="GeneID:31384" CDS 367..1680 /gene="Usf" /locus_tag="Dmel_CG17592" /gene_synonym="bHLHb13; CG17592; Dm Usf; Dmel\CG17592; DmUsf; dUSF; dUSF2" /note="CG17592 gene product from transcript CG17592-RB; CG17592-PB; Usf-PB" /codon_start=1 /product="Usf, isoform B" /protein_id="NP_572167.3" /db_xref="FLYBASE:FBpp0070669" /db_xref="GeneID:31384" /db_xref="FLYBASE:FBgn0029711" /translation="MNVHKRPRLNMEFGSSTSNTNTSTSPSSVNISNANPTAGPGLMT ITNHHTADLSEALVHSSFANGQQSLILTSDTGNPLMNSQGAQIFLTICGDENSDDSQE YYTIKQEPGCDLDIHSLLPSNLQLPNNLQLPTGCEIYLVKETGSLMGEPPTKAAIKLE LDTLSEKPLLPSVTTSSSTQSAVITAQTVNPPIPGNINTTTSTTSTTTTTSVLYGSHG NGHGHGHAHAQARSQPESAGQTPSSKLEAYKKRDDKRRATHNEVERRRRDKINSWIFK LKEMLPSLSSSSSFSEASTSPSTSGSTSTNGSSHSKGNASSSSGRAPPNDSKSQILIK ACEYIKSMQGEIDTLRDCLRETDSLRASNQALREELDRLKRQQQLQERFHTAGGRSTF NVTLNSLNSSATSDLFEGIDTTPNLAAVSSLGFGKRGLLISDFDE" misc_feature 1138..1407 /gene="Usf" /locus_tag="Dmel_CG17592" /gene_synonym="bHLHb13; CG17592; Dm Usf; Dmel\CG17592; DmUsf; dUSF; dUSF2" /note="basic Helix Loop Helix (bHLH) domain superfamily; Region: bHLH_SF; cl00081" /db_xref="CDD:469605" misc_feature order(1153..1158,1162..1164,1177..1179,1345..1350) /gene="Usf" /locus_tag="Dmel_CG17592" /gene_synonym="bHLHb13; CG17592; Dm Usf; Dmel\CG17592; DmUsf; dUSF; dUSF2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:381392" misc_feature order(1171..1176,1183..1188,1192..1197,1207..1209, 1348..1353,1360..1365,1372..1374,1378..1383,1390..1395) /gene="Usf" /locus_tag="Dmel_CG17592" /gene_synonym="bHLHb13; CG17592; Dm Usf; Dmel\CG17592; DmUsf; dUSF; dUSF2" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:381392" ORIGIN 1 ggcatatatt tgctgcccgc cggcgggcac actaagccaa acgaaaataa ttttgttaca 61 aaaaaaatca acaaatcgta ttgttaaatg gccgtgcgaa cacgaacgac cataaatccg 121 ccgcagcgct cgatttcaaa tcaaatcctc gaggcagtcg gtagttaata ataccgcaga 181 gcggccagat cgggggatat ctaccatcca tatccgtgta tcctccaact agagatcgga 241 gcaaatagtg gaggagatcc cgaatagatc cggagttacg tgattcccgg cgacacggat 301 acgattctgg ctgggattgg gctattggaa ttggtgtact gctaacggcg gatcatcgat 361 gcaacaatga atgttcacaa gcggccacgt ctgaatatgg aattcggctc ctccaccagc 421 aataccaaca cttccacatc cccgtcctcc gtaaatatca gcaatgcgaa tccaacagct 481 ggacctggcc tcatgaccat taccaatcac cacaccgctg atttgtcaga ggccctggtc 541 cacagttcct ttgccaatgg tcagcaaagt ctgattctca ccagcgacac gggaaatccg 601 ctgatgaata gccaaggtgc tcagatattt ctcaccattt gcggagacga gaactcggac 661 gattcgcagg agtactatac gattaaacag gaaccgggat gtgatctaga tatccattcg 721 ctgctgccta gcaatttgca gctgcccaac aatctgcagc tgcccactgg ctgtgagata 781 tatttggtca aggaaaccgg cagcttaatg ggtgagccgc cgacgaaggc ggccatcaag 841 ctggaactag atacgctaag cgaaaagccg ctccttccat ctgttacaac ttcctccagc 901 acacagtccg cggtaataac cgcccagacc gtgaatcctc ccattccagg taacatcaac 961 accaccacca gcaccactag caccaccacc accaccagtg tcctgtatgg ctcccatggc 1021 aatggtcatg gccatggcca tgctcacgcc caagcccgat cccagccaga atcagctggc 1081 caaacaccat ccagcaaact ggaggcgtac aagaaacgcg atgataaacg tcgtgccacg 1141 cacaacgagg tcgaacgccg gcgccgcgac aagatcaaca gctggatctt caagctcaag 1201 gagatgctgc ccagtctgag ctccagctcc agtttcagcg aggccagcac gagtcccagc 1261 accagcggaa gtacgagtac caacggaagt agccattcca aaggcaatgc cagcagttcc 1321 agcggacgag cgccgcccaa tgactccaaa tcgcagatcc tgatcaaggc atgcgagtac 1381 atcaagagca tgcagggcga gattgacacg ctgcgcgact gtctaaggga gacggatagc 1441 ctaagggcca gcaaccaggc gctgcgcgag gaacttgatc gcctgaagcg tcagcagcag 1501 ctccaggaac gcttccacac ggccggcgga agatcgacgt ttaatgttac cctaaattcg 1561 ctgaacagtt ccgcgaccag tgatctattc gagggaatcg atacgacacc caatctggcc 1621 gccgtctcgt cgctgggatt cggcaagcgt ggcctgctga tcagcgattt tgatgagtaa 1681 acaaaatctg cctgcgaaat aggagtggat agacaaaaaa aaaaaaaaaa aaaatagaaa 1741 tgaaaaacat atgggtggac cgattgggtt gctggttacg ggaataaaca aatatggagg 1801 cggcggatgg acaagccctg gcgccttcaa caaacatata cgcccatcca ccaaagaatg 1861 acgtgcaacg tacacgcaac gcaacacacg cagtacaata aacggacatg acgagtgatt 1921 ccttgttatc gccgctctgt tatatgttat ataagaaaag cagcatatat tacatatgtg 1981 tatcgatatg tgtatatggt tatgtatatg gctatgtata tgcatgtaca tatatgcagt 2041 cgaacttggg tgactcaagc caagttgttg gcctaaccgc tttgacaaaa agctgttctc 2101 aattgagttt aattaacgag ccacggcaca acacagctgc ttttgtatgt tatatgtatc 2161 tgttattggt attattccta accaaccccc ccctccaaaa agtgagcgcc caaaaagaaa 2221 aaaaacaaat catgaaaata acgatcgaac gaatttttgt accaccccca tgccgcgatc 2281 attatcatat tttgtttaga gtcttggaat attagatcac aaacaaatat tgttgataag 2341 aagctttaaa gcacgttctg ttcttccatg tttttttttt tcgtattaca ttatgtttaa 2401 gatatacgta ggtatagttg ttttgatttg cgcagcgaat ctagaactat aacttagcca 2461 tgtttcaaac aaactctttg tgttcattca agagaattca ctatgtattc actttcaaca 2521 agagattgtt gtatttaaat cgaaatatgt ttttcaaaaa tatcaatatt gaaatattag 2581 caaagtacag cgcaagataa gtataagtat aagtaatttc ttgctgaaag tgaaagtgga 2641 aactgaagtg gttaacaaag ttttcgattt gttgttatac aggaaattag ttgtaagtct 2701 gaagtttgag taacaaaagt tcgattgcac agatgtgaaa tgatttatgt tctcggatcc 2761 tcaagcggtt tgccatcatt atatacaaac gtacatacat acctatgaat tacccagaaa 2821 tacaagccta gaaaaaatct aaaagcgtta acgataccta cctattgcat atataccttt 2881 aactaaatca tatttggagc atgtttgtgc ttgatttttc gattttattg tactgtttct 2941 cggcactaat tacc