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LOCUS NM_131936 2426 bp mRNA linear INV 26-DEC-2023 A (CG3556), mRNA. ACCESSION NM_131936 VERSION NM_131936.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2426) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2426) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2426) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2426) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2426) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2426) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2426) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2426) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2426) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2426) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2426) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2426) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2426) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2426) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2426) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2426) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2426) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On May 8, 2012 this sequence version replaced NM_131936.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2426 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2426 /gene="CG3556" /locus_tag="Dmel_CG3556" /gene_synonym="Dmel\CG3556" /map="4C7-4C7" /db_xref="FLYBASE:FBgn0029708" /db_xref="GeneID:31380" CDS 385..2172 /gene="CG3556" /locus_tag="Dmel_CG3556" /gene_synonym="Dmel\CG3556" /note="CG3556 gene product from transcript CG3556-RA; CG3556-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_572164.2" /db_xref="FLYBASE:FBpp0070642" /db_xref="GeneID:31380" /db_xref="FLYBASE:FBgn0029708" /translation="MLSLSSPPWLLLLVLFFFANGSATVVSLAENVTLATLPSTSPIS VSFSTTSSVVAPISTELENQTASSSNLNTNNEASDEQTGNSNSNTSSHSRNINGLPSS NSNIDNANSNSSSVSSLSTTTSAISGVDQQESLILATPTALNGSGTPPEHQTIGQAPP TKGEQEAILRALDWLKEKRASDYGWGNDTHVVILAKELSGGRDPNDSVDGHVQVIQEL EDTLSVKEMEIEILAMLDRHHTLPKPLDLDKLARYVLALGSLCKDPKHFHGHDLVATL QHHEPAQDIEFALTTLSACSSAAHVRKRQIRRLLDIASGVTDQSVDAIAMVILALRCI VTDHRHRHLQHFVRRPARGLATLQDQRGSFGSLRSTALAMQALQDLEYDPAGHWNRTA ASRYILSRQRADGGWSEEPLQDGQEPDIGVGLTADIILALGWKGLGAVRALQCDHVIR ESSDPTENGEPKLAVPFGLSSSAEESDAKNISYTYTLWVGSNVTESFSLSLVSPKNTS FFKAMTQAAEMDPRFIFEAREWPNGHYVHTLYGKKEEPRGYHYWLLYRLPELPDPNNT PGNQLIAPVGVDELMVEDGEHYLYWYKKL" misc_feature <1129..>1515 /gene="CG3556" /locus_tag="Dmel_CG3556" /gene_synonym="Dmel\CG3556" /note="Eukaryotic cobalamin-binding protein; Region: Cobalamin_bind; pfam01122" /db_xref="CDD:460073" misc_feature 1549..>1641 /gene="CG3556" /locus_tag="Dmel_CG3556" /gene_synonym="Dmel\CG3556" /note="Prenyltransferase and squalene oxidase repeat; Region: Prenyltrans; pfam00432" /db_xref="CDD:395346" ORIGIN 1 gcagccctgc aaggaacggt ctgagaacat tgaaaatcaa aaaatcgcag gaagcgctgg 61 cgaaaaacgc gaatatcgag acgtccctcg ccccgcccgc aaaaaatcgc gaaatcttac 121 accgaaaccg aaatacaaga taattaaggg tataaatccc tcgaagcgac agaaaagcgg 181 gcgaaaaagg atacaatttc tagactttca agtgtgtcaa aatcgaacaa aggcgagaag 241 tcggattacg gattacatag aactttatat acatttgtat atgtgtatat agattgcata 301 taggctgata acgggacttc atttgccttt tatccttggc ggctcggcct ttgttgttat 361 tgtattatta taattctctt caggatgttg tcgctgtcat cgccgccgtg gctcttgctc 421 ctcgtccttt tcttcttcgc aaatggctcg gcaacagtgg tttccttggc ggagaatgtg 481 actctggcga cgttaccatc cacctcgcca atttccgtga gctttagcac gacctcctcg 541 gtggtggcgc ccatttccac cgaattggag aatcaaacag ccagcagcag caaccttaat 601 acaaacaacg aagccagcga tgagcaaact ggcaatagca acagcaacac gagcagtcac 661 agcagaaaca tcaatggttt gcccagcagc aacagcaaca ttgacaatgc caacagcaac 721 tcaagttccg tttcctcttt gagtacaacg acatctgcca tttctggtgt agatcagcag 781 gagtccctca tcctggcaac tcccactgcc ctgaatggca gcggtacacc gcccgagcat 841 cagacaattg gtcaggcacc gcccacaaag ggtgaacagg aggccatcct gcgagctttg 901 gattggctca aggagaagag ggcttcggac tacggctggg gcaacgatac ccatgtggtt 961 atactggcca aagagctttc cggcggccga gatcctaacg atagtgtaga tggtcatgtg 1021 caggtcatcc aagagctgga ggatacgcta tccgtgaagg aaatggagat cgagatcctg 1081 gccatgctgg atcgccatca tacactccca aagcccctgg atctcgacaa gctggccaga 1141 tacgtcctgg ccttgggttc cctgtgcaag gacccgaagc atttccatgg ccacgacttg 1201 gtggccacac tgcagcatca tgagccggcc caggatattg agttcgcact aaccactctg 1261 tcggcctgca gttcggcggc ccatgtaagg aaacgtcaga tccgacggct cctggacatt 1321 gccagcggag tgacggacca gagcgttgat gccattgcca tggtaattct agccttgcgt 1381 tgcatcgtca ccgatcatcg ccatcgacat ctgcaacact ttgtccgacg accggcgagg 1441 ggactggcca ctctgcagga tcagcgcggc agtttcggat cgcttaggag cacagcactc 1501 gccatgcagg ctctacagga tttagagtac gatccggctg gacattggaa ccgtacagcc 1561 gcctcgcgct acatcctgag tcgccagcga gcggatggag gatggagcga ggaaccgctg 1621 caggatggcc aggaacccga catcggtgtg ggcctcacgg cggacatcat tctcgctttg 1681 ggctggaagg gattgggtgc agtgcgggca ctgcaatgcg accatgtgat acgcgagagc 1741 agtgatccta cggagaacgg cgagccaaag ctggcggtgc ccttcggact tagttcctct 1801 gcagaagagt cggatgccaa gaacatctcc tacacgtaca cactttgggt gggatccaat 1861 gtgaccgagt ccttctccct gtcactcgtc tcacccaaga acactagctt ctttaaggcc 1921 atgacccaag cggccgaaat ggatcccaga tttattttcg aggctcgtga atggcccaat 1981 ggtcactatg tgcacaccct gtatggcaaa aaggaggagc ctcgagggta tcactactgg 2041 ctgctttatc gattgccaga gttgcccgat cccaataata cgcccgggaa tcagcttatt 2101 gcgcctgttg gtgtggacga gctaatggtc gaggatgggg agcattatct ttactggtac 2161 aagaagctct aagcacgcgg ccttagacgg agctgcagtt taacccacta agcaaagtcg 2221 ataaataccc ggtgctattg gactatattt attatatata tggccatagt cacgtctcac 2281 acacacacaa cacacacgca acaagcaaaa aggcacttac actcgcacag gaatagctgt 2341 atgctacaca gtacagctat tcctgagtaa gtgcatatat aactgcataa taatggcgta 2401 atcaaaaaaa aaaaacaaag caaaac