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LOCUS NM_130721 2721 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_130721 VERSION NM_130721.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2721) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2721) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2721) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2721) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2721) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2721) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2721) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2721) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2721) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2721) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2721) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2721) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2721) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2721) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2721) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2721) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2721) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2721) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2721) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2721) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2721) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2721) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2721) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_130721.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2721 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2721 /gene="CG2901" /locus_tag="Dmel_CG2901" /gene_synonym="Dmel\CG2901" /map="3F2-3F2" /db_xref="FLYBASE:FBgn0029679" /db_xref="GeneID:31338" CDS 106..2055 /gene="CG2901" /locus_tag="Dmel_CG2901" /gene_synonym="Dmel\CG2901" /note="CG2901 gene product from transcript CG2901-RA; CG2901-PA" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_570077.1" /db_xref="FLYBASE:FBpp0070578" /db_xref="GeneID:31338" /db_xref="FLYBASE:FBgn0029679" /translation="MKFGKTYESHLTIEWRQQYMRYGDLKELIKQGVENAPSPLTSSD YEVQAYYKAFEETFLTECQSELTGVNNFFLEKLLEARRKHGHLKLQLLAYSREPGHTG SDSSLSQRAERSQKKLMTTRQLRYAYAEFYLSLVLIQNYQSLNETGFRKICKKYDKNM RSVAAGRWFVENVLDAPFTDVRLLQRMTIEVEDLYTTHLANGDRSLAMEKLRVPPLGE PTPPSMVFRAGIALGMLIMLLVATAISYWKRAPLEDHTPGLMRLFRGPFTWVIFNFYM AANVAGWQQAGVNHILIFEIDPRSHLQPATFLEIACTFGILWALSMLGFLYNDLIGVS DPYVFPLGLILIMVGLLVVPLPIMNWPARWWTIKLVGRVITAPLHYVGFADFWMGDQM NSLVSCIVDHYYTVRFYAISWLRYDRVNNCFEPDVMVPITMCLPGWFRFAQCLRRFRD SGSKSMSYLINAGKYSTTFLVVLFSTLRRNSEGGYANTFSNPYTWLFLSSCVVATIYC YLWDVIRDFGLFRIMRGERIFLRKQLVYPQAFYYFVIVENLVLRLFWAVEFTILYHNL MTPYNMRTISSILEITRRFIWNYVRLENEHLFNCGNFRATRDIHLAALNPRQERMLES MMDESDGVSNRRKSNERIRLGKEYF" misc_feature 109..579 /gene="CG2901" /locus_tag="Dmel_CG2901" /gene_synonym="Dmel\CG2901" /note="SPX domain of the xenotropic and polytropic retrovirus receptor 1 (XPR1) and related proteins; Region: SPX_XPR1_like; cd14477" /db_xref="CDD:269898" misc_feature 880..1896 /gene="CG2901" /locus_tag="Dmel_CG2901" /gene_synonym="Dmel\CG2901" /note="EXS family; Region: EXS; pfam03124" /db_xref="CDD:460816" ORIGIN 1 gtattgtcag gagaaagatg tcagaattta tagggcctga cgaatccggc tagtttaagc 61 cgtacaacag ccacgccttg tgggctagcc tgcccctagc tgagtatgaa gtttggcaag 121 acctacgagt cccacctgac gatcgagtgg cgccagcagt atatgcgata tggggatctc 181 aaggagctga tcaaacaagg cgtggagaac gccccctctc cgcttacttc ctcggactac 241 gaagttcagg cctattataa ggccttcgag gaaacctttc tcaccgaatg ccaatcggaa 301 ctgaccgggg tgaacaattt ctttcttgaa aaactcctgg aggcccgacg caagcatggc 361 catctgaagc ttcagctttt ggcctattcc cgggaacccg gacacaccgg cagtgattcc 421 tcgctttccc agcgagccga gaggagccaa aaaaagctta tgacaactcg ccagttaaga 481 tacgcctatg ccgagttcta tctaagtctg gttctcatcc aaaactatca gtcgctgaac 541 gagacgggtt tccgtaagat ctgcaagaag tacgacaaga atatgcgatc cgtagctgct 601 ggcaggtggt ttgtagagaa cgtgctggat gcccccttta cggatgtacg tctattgcag 661 cgcatgacca tcgaggtgga ggatctatat acgacccatc tggcgaatgg ggatcgctcg 721 ttggctatgg aaaagctaag agttccgcct ttgggcgagc ccactcctcc atcgatggtc 781 tttcgtgcgg gaatcgctct cggcatgcta atcatgctgc tcgtggccac cgccatcagt 841 tactggaaac gagctccatt ggaggaccac actccgggtc tgatgcgcct ctttcgcggc 901 ccattcacct gggtgatctt caacttttac atggccgcca atgtggccgg atggcagcag 961 gccggagtca atcacattct tatcttcgaa atagacccca gaagtcatct gcagccggcc 1021 acatttctag aaattgcctg cacctttggc attctttggg ccctgtccat gttggggttc 1081 ctgtacaacg acttgatagg cgtctcggat ccctatgtat tcccactggg actcatcctg 1141 atcatggttg gcctgctggt ggtgcctctg cctataatga actggcctgc caggtggtgg 1201 accattaagc tggtgggtcg cgtcatcacc gctccactgc actacgtggg atttgccgac 1261 ttctggatgg gcgatcagat gaattcgctg gtgtcctgca ttgtggatca ctattataca 1321 gtaaggttct atgcgataag ttggctgcga tatgatcggg tgaacaactg ctttgaaccg 1381 gatgtgatgg tcccgattac catgtgcctg cccggttggt ttcgatttgc tcagtgcctg 1441 cgaagattca gggacagtgg ttccaagtcg atgagctacc tgatcaatgc gggaaagtac 1501 tcaactacat ttttggtcgt cctgttctcc acgctgcgca ggaattcgga gggtggatat 1561 gccaatacgt tcagcaaccc ctacacctgg ctattcctct cgagctgcgt ggtggccacc 1621 atctactgct atttgtggga tgttattcgc gactttgggc tcttcaggat tatgcgcggc 1681 gagcgtatat tccttcgaaa gcaattggtt tatccgcagg ccttctacta ctttgtaatc 1741 gtagagaatc tggtgttgcg gctcttttgg gccgttgagt tcaccatcct ttatcacaat 1801 ctgatgactc cctataatat gaggaccatt tccagtatcc tggagatcac tagacgcttc 1861 atatggaact acgtccgtct cgagaacgaa cacttgttca actgcggaaa cttccgcgcc 1921 acaagggaca tccatttggc tgccctgaat cctcgccagg agcgaatgct ggagagcatg 1981 atggacgagt cggatggcgt gtcgaatcgc cgcaaatcga acgagcgaat tcgcctgggg 2041 aaggagtact tctaaaggca gctgctgatc tttatttccc cgtcgtcgtc tttaattaat 2101 tcatttgtgc aaaatacaag tcagatggaa aggctgagag acagggcgac tggagaaagg 2161 gagcacgagg agcacgcgcc aaaccggttg accagctgca cccaaaagtt gcaattcccc 2221 cggactccct tctccatatg tacatacata catattatat ttatagagat atatcgcctg 2281 gtcaggtaac aatcgtcatt gcttgaaagg aggagcagag cggagtcaag agcaaggggg 2341 ggagggatcc tcgtgtcgag ctcccgatct cggatcagca acggcttcga gcaagctgtt 2401 cgacaatctc ttaattgact ctcatcgagc tttgattggc cacataatta gccaagagaa 2461 agagagtata aggaaccctg ggatgatcac cggtcaccca ttctaatctg gagaaaggca 2521 ttctaataac aggaatgttt cggttgcatc agctcattaa tatagactct gattgcttga 2581 aaatcatttt atcaaactat attttgtagg cttaaaaatt gtaattgttt aaatatttgt 2641 ataccatttg tgcatcttcc ttttctgaat cttttaatcg gataaaatca ttgctttcaa 2701 tgtaaataga gaacttaatg c