Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NM_130718 2050 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_130718 VERSION NM_130718.5 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2050) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2050) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2050) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2050) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2050) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2050) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2050) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2050) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2050) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2050) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2050) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2050) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2050) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2050) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2050) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2050) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2050) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2050) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2050) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2050) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2050) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2050) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2050) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Oct 19, 2015 this sequence version replaced NM_130718.4. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2050 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2050 /gene="HIP" /locus_tag="Dmel_CG32789" /old_locus_tag="CG32789" /gene_synonym="anon-EST:fe1A9; CG32789; Dmel\CG32789; Hip" /note="Hsc/Hsp70-interacting protein" /map="3F2-3F2" /db_xref="FLYBASE:FBgn0260484" /db_xref="GeneID:318211" CDS 98..1231 /gene="HIP" /locus_tag="Dmel_CG32789" /old_locus_tag="CG32789" /gene_synonym="anon-EST:fe1A9; CG32789; Dmel\CG32789; Hip" /note="CG32789 gene product from transcript CG32789-RA; CG32789-PA; HIP-PA; anon-fast-evolving-1A9" /codon_start=1 /product="Hsc/Hsp70-interacting protein" /protein_id="NP_570074.3" /db_xref="FLYBASE:FBpp0070575" /db_xref="GeneID:318211" /db_xref="FLYBASE:FBgn0260484" /translation="MAFTMQTGDLKKLKYFIDFALENPTFLNMPQLQFVKDFVEKFGG TVPPGQFNGGSAGGKCPFGGVAGAKANEPANAPEDSEDEKSLSDPESDVELDMEGVIE ADSDPAQPMGNYSKKATEEEVEQASELRAQAASAYGQQKFDEAIALYTKAIELSPGNA LFHAKRGQAFLKLKKPNACIRDCDVALELNSDLAAGYKFRGRARRLLGDFELAAHDLR QACKLDFDEETDEWLKEVTPNAKKIEQHRLKQERRQAERKIKERQRDQRRARKEQEKH NASSGGSSGEFSGGNPGNGNMSDILGAMSDPEVSAAIQDILSNPGNITKYASNPKIYN LIKKIVPGGDVGAAFGQAGEKAGKPSEPKPKKDSADFVDDGLD" misc_feature 125..238 /gene="HIP" /locus_tag="Dmel_CG32789" /old_locus_tag="CG32789" /gene_synonym="anon-EST:fe1A9; CG32789; Dmel\CG32789; Hip" /note="N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; Region: Hip_N; cd14438" /db_xref="CDD:271228" misc_feature order(125..127,131..139,143..148,155..160,176..178, 188..190,197..202,206..214,218..238) /gene="HIP" /locus_tag="Dmel_CG32789" /gene_synonym="anon-EST:fe1A9; CG32789; Dmel\CG32789; Hip" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:271228" misc_feature 473..559 /gene="HIP" /locus_tag="Dmel_CG32789" /old_locus_tag="CG32789" /gene_synonym="anon-EST:fe1A9; CG32789; Dmel\CG32789; Hip" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature order(476..478,485..490,497..502,506..508,578..580, 587..592,599..604,608..613,680..682,689..694,701..706, 713..715) /gene="HIP" /locus_tag="Dmel_CG32789" /gene_synonym="anon-EST:fe1A9; CG32789; Dmel\CG32789; Hip" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature <512..904 /gene="HIP" /locus_tag="Dmel_CG32789" /old_locus_tag="CG32789" /gene_synonym="anon-EST:fe1A9; CG32789; Dmel\CG32789; Hip" /note="Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; Region: NlpI; COG4785" /db_xref="CDD:443815" misc_feature 572..664 /gene="HIP" /locus_tag="Dmel_CG32789" /old_locus_tag="CG32789" /gene_synonym="anon-EST:fe1A9; CG32789; Dmel\CG32789; Hip" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 677..763 /gene="HIP" /locus_tag="Dmel_CG32789" /old_locus_tag="CG32789" /gene_synonym="anon-EST:fe1A9; CG32789; Dmel\CG32789; Hip" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 992..1105 /gene="HIP" /locus_tag="Dmel_CG32789" /old_locus_tag="CG32789" /gene_synonym="anon-EST:fe1A9; CG32789; Dmel\CG32789; Hip" /note="Heat shock chaperonin-binding motif; Region: STI1; smart00727" /db_xref="CDD:128966" ORIGIN 1 ataccaatcg atagggcaga gcaaaagtgg acgtaaagct aagcaaatat tgcaggacat 61 cagatctgaa aacatcaaga caaaacggaa ttcagaaatg gctttcacaa tgcaaaccgg 121 ggatctgaag aagctgaagt acttcatcga ctttgcgctt gagaatccca ccttcttgaa 181 catgccgcag ctgcagttcg tcaaagattt cgtggagaag tttggtggca cggtgccgcc 241 tggccaattc aacggtggca gcgccggagg caagtgccca ttcggcggtg ttgctggtgc 301 caaggccaac gagccggcca atgcccccga ggatagcgag gacgaaaagt ccctctccga 361 tcctgagtcg gacgtggagc tggacatgga gggtgtgatc gaggcggaca gcgaccccgc 421 ccaacccatg ggcaactaca gcaagaaggc caccgaagag gaggtggagc aggcgagcga 481 gctgcgcgcc caggcggcct ccgcttacgg ccagcagaag ttcgacgagg ccatcgcctt 541 gtacaccaag gccattgaac tgagcccggg taatgccctt ttccacgcta agcgtggtca 601 ggccttcctc aagctgaaga agccgaatgc ctgcattcgg gactgcgacg tggcgctgga 661 actcaactcg gatttggcgg ctggctacaa gttcagggga cgcgcccgtc gcctcctcgg 721 agattttgag ctggctgccc atgatttgcg ccaagcatgc aagctggact ttgacgagga 781 gacagacgag tggctaaagg aggtcactcc gaatgccaag aaaatcgagc agcatcgctt 841 gaagcaggag cgtcgccagg cagagcgtaa gatcaaggaa cgccagcggg atcagaggcg 901 cgcacgtaag gagcaggaaa agcacaatgc cagctctggt ggatcatctg gagaattttc 961 cggtgggaat cctggtaacg gaaatatgtc tgatatactg ggcgccatgt cagatcccga 1021 ggtgtcagcc gccattcagg acattttgtc aaatccgggt aacatcacaa agtacgcgtc 1081 gaacccgaag atatacaacc ttatcaagaa gattgtgccc ggtggagatg tgggtgctgc 1141 ctttggccaa gcgggtgaaa aggctggaaa gccgagcgag cctaagccta aaaaggattc 1201 cgccgacttc gtcgatgacg gtttggacta aggtttagaa atggggcagt agtaagactg 1261 aaacatgcgt cgataaaaag aagttaacaa acaattacac gaaatcgagc gagattacaa 1321 aacaacaaag aaagagaaag caacagagtg cggggaagaa gatggactac acgaaaaaca 1381 aaagggaaag caactgcctt acacattttt gcagctggga aaaaacaaac atttcctaag 1441 ctttaactta accaacacgt aaaagaacgg gcgacaatgg agaaaattca aatattcaaa 1501 atactacaag cagtcagaag aataagcaac atttatttaa atcgagaaga aagagatgtt 1561 ggagatgctg gagacgcttc ttcacatatt attgaaaagc atacttgcgg ccattaaagt 1621 ggcaaatgaa actatacaaa ggagctagaa tatgcttaaa aacttcacat ttgcagttca 1681 caggtaaatc aaaagattgt cctgtaacga acaaaacatg aatgtttaga cgtcaagtca 1741 gattcaaggg tgccgatcga tctagttgaa ctaaagctcg agaaacaacc aaaagaaaat 1801 aaaaaatata tatatgttca ataatattag cctaaattac cgagaacgaa gaaacggata 1861 aaactaatcg catcatttgg tcaaacaaaa ttgtactgag taggatttaa atcatattgt 1921 atgcaaatgc atttagcccc ccaacatgaa agcaatcgcc cattcattca cacactcatt 1981 cacacactca ttcacacact cattcaacca gtgatcaatg gaaataaata aacgaatcaa 2041 caagaacccg