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LOCUS NM_130708 2794 bp mRNA linear INV 26-DEC-2023 A (CG10803), mRNA. ACCESSION NM_130708 VERSION NM_130708.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2794) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2794) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2794) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2794) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2794) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2794) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2794) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2794) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2794) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2794) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2794) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2794) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2794) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2794) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2794) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2794) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2794) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2794) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2794) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2794) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2794) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2794) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2794) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_130708.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2794 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2794 /gene="CG10803" /locus_tag="Dmel_CG10803" /gene_synonym="Dmel\CG10803; rop-1" /map="3D4-3D4" /db_xref="FLYBASE:FBgn0029666" /db_xref="GeneID:31320" CDS 192..2105 /gene="CG10803" /locus_tag="Dmel_CG10803" /gene_synonym="Dmel\CG10803; rop-1" /note="CG10803 gene product from transcript CG10803-RA; CG10803-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_570064.1" /db_xref="FLYBASE:FBpp0070544" /db_xref="GeneID:31320" /db_xref="FLYBASE:FBgn0029666" /translation="MKKGKGSSSLGSKESSGRPSTAVLVFKKCARFADSSESAEIQQD GKEQLPERQDSLDAKESAGMEKEAISNQPLKDEPSKDEPNQSEGTAISTIPAIDKLRR FCFIGSTDEPVYTTPALDLVVENNFASLKELCSQVSEDELVECLLSVLGSEPNEEQPP RPDEPLLILAVFFTTCEDEKKRNAVRNRFTDLITSESDLLLFVQLVKRVQKLLERKTP FNRTVRKAVLNWYGTKSLDRLLHFWSIGDGNRWPAHRDLLYRLHFRHANFLPEIIAAL RLLSSSPKELSQWPDFLTPLTSFRETIEGVVKLRLLTDPEQAISIVKKLSLSWEHVPF HLLHDPRLAHFLIPHMSYEQLLQKWPRLSRLNSRVRPFAEQLLDKKKLKASNVPPVRL LLEDMRLRKPKKVVNQLVLPSSLKNKNTFKFQCATTSFQKASFLHSVYEISFGLNKAL GRRLHITLNLEQAYLGKYLSGPCRSLKYLDALVALGFGYFRSDRKVTVEFWHDRSGKL KALPWTNEMSVSEAKTCCENQKVGKVRQSLNEILFRALLDMQNTFDVFLVLVPGAARG NPENNSKCLAALMDKYREKRNSNAKFIMVSLRQRQRSMIYSSGRNENLLELCSLDKHT PRLINAFVRNKFY" misc_feature <780..1373 /gene="CG10803" /locus_tag="Dmel_CG10803" /gene_synonym="Dmel\CG10803; rop-1" /note="TROVE domain; Region: TROVE; pfam05731" /db_xref="CDD:461724" ORIGIN 1 attgttttta tcgcgaattg ccaacgctct gtacaagtga tgtacaacac gagttaaata 61 caaaacaaaa cgaacggata aaagttgcac gctgggcgaa tcgtgacaaa gagggcgtgg 121 caaatcgaaa tatagtatag atcaaatccc cagaaggcgc ggcataaacg taatatgcga 181 aaatcgctgc catgaaaaag ggcaagggat caagctccct tggatcgaag gaatcatcgg 241 ggagaccatc cacggcagtc ctggtgttca agaagtgcgc tagatttgcg gactcttcag 301 aatcggcgga gatccagcag gacggcaagg agcaactgcc tgagaggcaa gactcgctgg 361 atgccaagga atctgcagga atggaaaaag aggcgattag caatcagcca ttaaaggatg 421 agccatcgaa agatgaacct aaccaaagcg agggcactgc catttccacc ataccggcga 481 ttgataaact acgtcgcttc tgctttattg gatccacgga cgagcccgtc tataccacgc 541 ccgcactgga tcttgttgtc gagaacaatt tcgcatcgct aaaggaactc tgctcccaag 601 tgagtgaaga cgagctggtc gagtgcttgt tgagcgtttt gggcagcgaa ccaaatgagg 661 agcaacctcc ccgacccgac gagccgctcc taatcctggc tgttttcttt accacgtgcg 721 aagacgagaa gaagcgaaat gcggtgcgta atagattcac cgacctgatc accagcgaat 781 cggatcttct actgttcgtc cagttggtca agcgagtcca gaagttgctc gaacgtaaaa 841 cgcccttcaa tcgcacagtg cgaaaggccg tcctcaactg gtatggcacg aaatcgcttg 901 atcgccttct ccacttctgg tcaataggcg atggaaatcg ttggcctgcg catcgcgatc 961 tactgtaccg cctccatttt cggcatgcca attttttacc ggaaatcatt gctgccttaa 1021 ggctgctctc atcatcgcca aaggagctat cgcagtggcc tgatttttta acgcccttga 1081 ccagctttcg cgaaactatt gagggtgttg tgaagcttcg gctactcacg gatcccgaac 1141 aggctatctc cattgtgaag aagttgtcgc tgagctggga gcatgtgcct tttcatttgc 1201 ttcacgaccc caggctggcg cattttctta ttccacacat gagctatgag caacttcttc 1261 agaaatggcc acgcctctcg cgacttaact cccgagtgcg cccctttgct gagcaattgc 1321 tggataagaa gaagcttaag gcgagcaatg ttccgcccgt acgtctgctg ttggaggata 1381 tgcgtttgag gaagcccaaa aaggtggtta atcagttggt actaccttcg tcactcaaaa 1441 acaagaatac atttaaattc cagtgtgcaa ctacttcgtt ccaaaaggcg agtttcctgc 1501 atagcgtcta cgaaatatcc tttggcctga acaaggcact cggtaggcga ctgcacatta 1561 ccctcaatct ggagcaggcc tatctgggca aatacctttc tggtccatgt cgttcgctga 1621 agtacttaga cgccctggtg gcattgggtt ttggctattt ccgcagcgac cgaaaggtga 1681 cggtggagtt ttggcacgac cgcagtggca aattgaaggc gttgccgtgg acaaatgaga 1741 tgtctgtttc agaggccaag acctgttgcg agaatcagaa ggtgggcaaa gtgaggcaat 1801 cgctaaatga aattctgttc agagcgctat tggatatgca gaatacgttc gacgtgtttt 1861 tggtactagt gccgggtgcc gcgcgaggaa atccggaaaa taattcaaag tgcttggctg 1921 ctctaatgga taagtatcgc gaaaagcgaa actctaatgc taaattcata atggtgagcc 1981 tgcggcagcg tcaacgctcc atgatatatt ccagcggacg aaacgagaac ttgttagagt 2041 tgtgcagcct ggataagcac acaccgcgtt tgattaacgc atttgtccgc aataagttct 2101 actagacggt gagctgcatt gcgaatatcg gacgacccat ttcatcgcac aactgcaggc 2161 acaaagcagt tccatttgtt gaaggacgat ggccatcggt tagttgccat cggccatctc 2221 tctcgctttc atagatgcct ggtcgttcgg tcctctcact ccattttcga atagcttttg 2281 tgtaacatat tcataggccc ttggtgtgta atcgttgtag aaccaggcca ccaactcaat 2341 gctacattca tatttacata ctactaattg taatagttgc atcccggaat ccagaattta 2401 aaattcctat cgggctagta agatattatc gctcgttttg tgtaatgaaa ttgtgtatta 2461 gcatttgtaa tttttactcg atttggtgta ttcattttgt taaaattaaa ccgaatcaac 2521 tgaactgaac ttaatctaaa ttcaatttgg atttaaaaca atctcaatga aatcgcaagc 2581 gcaaacaaca acaaaagaac cgacaaaaaa aaaaaaaaag aaaaacaaat tgccttacaa 2641 acaaaaatgt tagtaaaact ttcattttag tttagacttt ttcaaaaatt gaatactgga 2701 actgaaacac aatttatggc atttagataa agttaaagtt aaatataaac taattgtatg 2761 gcctatgtat tgaatattaa tctaacgtaa catt