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LOCUS NM_130680 2928 bp mRNA linear INV 26-DEC-2023 E (CG3588), mRNA. ACCESSION NM_130680 VERSION NM_130680.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2928) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2928) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2928) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2928) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2928) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2928) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2928) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2928) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2928) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2928) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2928) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2928) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2928) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2928) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2928) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2928) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2928) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2928) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2928) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2928) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2928) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2928) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2928) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_130680.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2928 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2928 /gene="CG3588" /locus_tag="Dmel_CG3588" /gene_synonym="Dmel\CG3588; EG:100G7.6" /map="3C3-3C3" /db_xref="FLYBASE:FBgn0025643" /db_xref="GeneID:31278" CDS 210..2885 /gene="CG3588" /locus_tag="Dmel_CG3588" /gene_synonym="Dmel\CG3588; EG:100G7.6" /note="CG3588 gene product from transcript CG3588-RE; CG3588-PE" /codon_start=1 /product="uncharacterized protein, isoform E" /protein_id="NP_570036.3" /db_xref="FLYBASE:FBpp0290280" /db_xref="GeneID:31278" /db_xref="FLYBASE:FBgn0025643" /translation="MRHAFVGLIVCWLAVCQPQAEAQFGGFGFQPQFAYQQPQFQQVY RQPQLQPQVYRQPQAYQQQPLVYYQQPQQPQQFRQRQGSVSKANTNAYERQVDFGNNL EYTQGVSNSRAVTKQNGQRVVTKSQAQTRDVDLGGLQLGNTLTRTRTNANGQVSQGIA DQFRIGNVGLGASLSPQNLQNGFGLQRGADGDLRLGLGLLNLDLDRNVANSNTLSQAQ VNANGKGARAGSNSNSQSNTQHFGGVTVTDTRANSNAFGKAQRGQTSATTGGFGGNAA TNGQSFGGPFQRVVRQNRRPKRKAQFVPFGYPRIGFGPVLSPLERPRRQFGRPGFGGP GFGGEFGGGPGFGGPGFGGPGFGGPGFEQEFYEPERQQHKKKGNKNQAHGNANAQGGP GFNQQASSNNHASPGNTGSSSISSNLAQDGSSGQVSSANTNTHQGQTANGGYQSDQNS QSQALNFRPGEQQASSANANTQHTQQGNRDTYDSNSGSTSTNNNKFGSATNTANTNSQ VVRDGNRQDATSDANSQSIFQGNNGQGDASAQTNAQTSSQQGPGGFISNSASSSATAT AGNGQSANANSNANAGGGVGGAGAGANAGGFGGGADANSGANGGGGSAGANAGANGGF GGFGGFGGFGGGGGGGANANSNAFGGYDGFGFFGLRQRAQQKIRLQRWQPRTQNGTSS RGTSTNENFEYVYFNRTSSSSRLEDLQPDNDDSSGRDLEVAGTPLNTSVDEFGPYDST QRQGRTFSVIYDWISGFFNSCVSPCTLEAFQKQTCCETYVVDPSYPPPPPPPPPPPPP QTCCAPVRPPYAPPVRPLPPPPPPPPPVPYPYTPIYPNKKTPVVVVATPINCCTVCTF TYYGPPPCGRLYNNSSSGSDGKKVTIYVPPPYYGR" misc_feature 1398..>1862 /gene="CG3588" /locus_tag="Dmel_CG3588" /gene_synonym="Dmel\CG3588; EG:100G7.6" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" ORIGIN 1 gcgctcattg cgtgcgctgt tttcgcaacg gcaacggaaa attagccacc cggttgcggt 61 gcaagcgaga tagcgagtgt acggcaacgg aatacggatt ttcagagtgc gggaaagtac 121 gaaaagtacg gaatacacga gaaccggagg caggagcaca aagaacggag aacggcgaac 181 ggcaaacgga gtggggatac gtagccagga tgcgacacgc atttgttgga ttaattgtgt 241 gctggctggc agtttgtcaa ccgcaagctg aggcgcagtt tggcggcttt ggattccagc 301 cacagttcgc ctaccagcag ccgcagttcc aacaggtata ccgccaaccg cagttgcaac 361 cgcaggtgta tcgccaacca caggcttacc aacaacaacc tttggtttat taccaacagc 421 cccagcagcc acagcagttc cgccagcgac agggatccgt ttccaaggcg aacacgaatg 481 cctacgagcg ccaggtggac tttggcaaca accttgagta cacccagggt gtgtccaatt 541 cacgagcggt taccaaacag aatggccagc gtgtggtgac caagagccag gcgcagacga 601 gggatgtcga tctgggtggt ctgcagttgg gcaacacact aaccaggacc aggacgaatg 661 ccaatggtca ggtgtcgcag ggcattgccg atcagttccg catcggaaac gtgggactcg 721 gagcctcgct gtcgccacag aatcttcaga atggcttcgg actgcagcgt ggcgccgatg 781 gagaccttcg cctgggcttg ggtctgctca acttggatct tgaccgcaat gtggccaatt 841 cgaacaccct gtcgcaggcg caggtaaatg ccaacggcaa gggtgcccgg gctggatcga 901 acagcaactc gcagtcgaac acccagcact ttggcggcgt caccgtcacc gatacgcgcg 961 ccaactcgaa tgcctttggc aaggcgcaaa ggggacagac ctcggccacc accggcggct 1021 tcggcggcaa tgcggccacc aatggccaga gtttcggtgg tcccttccag cgagttgtgc 1081 gccagaatag gcggcccaag cgaaaggctc agttcgtccc cttcgggtat cctcgaattg 1141 gtttcggccc cgtcttgagt cccttggaaa gaccgaggag gcagttcggc aggccgggtt 1201 tcggtggacc aggatttgga ggagaattcg gtggaggacc tgggtttgga ggacctggct 1261 ttggaggtcc tggttttgga ggacctggct tcgagcagga gttctacgag cccgaacgtc 1321 agcaacacaa gaagaagggt aacaagaacc aggcgcatgg caatgcgaat gcccaaggtg 1381 gacctggatt caaccagcag gcctcgagca ataaccacgc cagtcccggc aacacgggca 1441 gcagttccat cagctccaat ttggcccagg acggcagcag tggccaggtg agctcggcca 1501 atacaaacac ccatcagggc caaacggcga acggtggcta ccagagtgac cagaactcgc 1561 agagccaggc gctcaacttc cggccgggcg agcagcaggc ctccagcgcg aatgcgaaca 1621 ctcagcacac ccagcagggc aatcgcgaca cctatgactc gaacagtgga tccacctcca 1681 cgaacaacaa caagtttggc tccgcgacga acacggccaa cacgaactcg caggtggtca 1741 gggatggcaa tcgccaggat gcgaccagcg atgcgaacag tcagagcatc ttccagggca 1801 acaatggcca gggagacgcc tccgctcaga cgaatgcgca gacgagcagc cagcaggggc 1861 ccggaggatt tatcagcaac tcggcctcca gcagtgccac cgccaccgct gggaatggac 1921 agtcggccaa tgcgaattcg aacgcgaatg cgggcggagg tgtaggtggt gcgggcgcag 1981 gagccaatgc tggcggattt ggaggcggtg ctgatgccaa ttccggtgcc aatggcggtg 2041 gcggcagtgc tggagcgaat gccggtgcca atggtggctt cggtggattc ggtggattcg 2101 gtggcttcgg cggcggcggt ggcggcggtg ccaatgcgaa cagcaatgcc tttggtggct 2161 acgatggatt cggattcttc ggacttcgcc aacgtgccca gcaaaagatt cgcttgcagc 2221 gctggcagcc acgcacccag aacggaacat catccagggg cacctcgact aacgaaaact 2281 ttgagtatgt gtacttcaat cgcacatcgt cgtcgtcccg cctcgaagat ctgcagcctg 2341 acaatgacga tagctctggc cgggatttgg aagtggctgg gacaccgctg aatacttcgg 2401 tggatgagtt cggaccgtac gatagtacgc agcgtcaggg acgcaccttc agcgtgatct 2461 atgactggat cagcggattt ttcaactcct gcgtctcacc ctgcaccttg gaggccttcc 2521 agaagcagac ctgctgtgaa acctacgtgg ttgatccctc gtatccacca ccaccgccac 2581 cgcctccgcc accaccacct ccacagactt gctgtgcacc ggtgagacca ccctacgccc 2641 caccagttag accactgcca ccaccaccac cgccgccgcc acccgtgccc tacccctata 2701 caccgatcta tcccaataag aagacgcccg tggtggtggt ggccacgccc atcaactgct 2761 gcacagtctg caccttcacg tactacggac caccgccctg tgggcggctc tacaacaaca 2821 gcagcagcgg aagcgatggc aagaaggtca ccatctatgt gccaccaccc tattatgggc 2881 ggtaaaacaa gtagacccaa ccaaccatag ttacctgctc atcgcacg