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LOCUS NM_130617 2664 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_130617 VERSION NM_130617.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2664) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2664) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2664) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2664) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2664) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2664) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2664) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2664) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2664) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2664) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2664) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2664) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2664) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2664) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2664) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2664) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2664) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2664) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2664) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2664) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2664) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2664) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2664) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_130617.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2664 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2664 /gene="CG4281" /locus_tag="Dmel_CG4281" /gene_synonym="Dmel\CG4281; EG:22E5.7" /map="2C8-2C8" /db_xref="FLYBASE:FBgn0025626" /db_xref="GeneID:31171" CDS 152..2242 /gene="CG4281" /locus_tag="Dmel_CG4281" /gene_synonym="Dmel\CG4281; EG:22E5.7" /note="CG4281 gene product from transcript CG4281-RA; CG4281-PA" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_569973.1" /db_xref="FLYBASE:FBpp0070325" /db_xref="GeneID:31171" /db_xref="FLYBASE:FBgn0025626" /translation="MDQFSHDLTLALDLTLMDRASGGVGRWGSRRRTRSTGNLPCAPQ PTEDSSSSPTDALNQGHHHGHHGHHHHHHHTSANVDGLDTHNLKLPASDSDEKAEAML PLRLPLTLPIRMGALESDSLNETTFSPARFYKPNSRRKRKIKRMSMEFEFSKDTSHTF TESPLQPSLLSSSGSATGTIRKRLLKIDATGHRSHLFFCGKRKRSNRDRYHEQDSVKL YALPHSQVDDQHVEQPQHQQQRMRPRSYSSTSKPLSDRLLPLNKGLLSKINRMAAQGQ QTKHTQKTETKDKDLKCHRSEGPEGVSLEMEELPDQKDAVQKLPLPSADFTTANFNSI SMDTIVPVTDIDALLLSTPPAAPLLRKKAQGQAPGHSSSSSSKTERRRRFQTFPQPQL QLQAQSMDCSELYDFLSSSSLSSSTDSEAEVGGHRRHDTDREGDDELTDWPGNEFGPG ARYDPKRKLTKKSLLPQIRSDDTIGEDDTLMSGTEAGAVGMEPPSKSPVQLPESLQDL SRFQPAGVSEPIEIQNACSEMETNADGTMPASRQIESEMSGETSNPFLSSSPPGHAQG QEVREIRAGCRRINGERPGFSIKMSVNERIARFLQDSQQTQIRLPDIELYETDSMSNL ATLYSLTMVVEHGCTVLTKTGNTTQTVSMDHLQQGLQPRADLFGDFKRRCYGEEGEEE GEQQQPLQQDPGQI" ORIGIN 1 cgatggtttt cgaagacact atcgcaaatc gcataccgaa gtgatttctg gtgcattttt 61 gtttcttgtt tgtgcacgtg cagaacgcaa ataaatgcgc cgagcctgag tcaatgcgag 121 cggacaggag gacagcggat agcgggcggc catggatcaa ttctcgcacg atctgacgtt 181 ggctctggac ctgacgctga tggacagggc tagtggcggc gtcggtaggt ggggctcccg 241 ccgcaggaca cgttccacgg gcaatctgcc ctgcgcccct cagcccacgg aggactcctc 301 gagcagtccc acggatgcgc taaaccaggg gcaccatcac gggcatcatg gccaccacca 361 ccatcaccac cacacaagtg ccaacgtgga cggactggac acacacaacc ttaagttgcc 421 agccagcgac tctgacgaaa aggcggaggc gatgctgcct ctgcgtctgc cactgacctt 481 gcctatacgc atgggtgccc tggagtccga ctcgcttaac gagaccacct tcagtccagc 541 cagattctac aagcccaact cgcgaaggaa acgcaagatc aaacggatgt ccatggagtt 601 cgagttcagc aaggatacat cacacacctt caccgaatcg ccactgcagc ccagcctgct 661 aagtagcagc ggttctgcta ctggaaccat acgcaagcga ttgttgaaaa ttgacgccac 721 tggacatcgc tcgcatttgt tcttctgcgg caaacgcaag cgctcaaacc gtgatcgcta 781 ccatgagcag gattcggtta agctgtacgc cttgccacac tcacaagtag atgaccagca 841 cgtagagcaa ccacagcacc agcagcagag gatgcgcccc cgcagctact cctccacatc 901 gaagccactc agtgaccgcc tgcttccact gaacaaggga ctgctgtcga agatcaaccg 961 aatggctgcc cagggacagc agactaagca cacccaaaag actgagacaa aggacaagga 1021 cttgaaatgt catcgttctg aaggacccga aggagtgagc ctggagatgg aggagctgcc 1081 cgatcaaaag gacgcggtcc agaagctacc tttgccaagt gctgatttta cgaccgccaa 1141 ttttaactcc atcagcatgg acaccattgt gcctgtgacc gatattgatg ccttgttatt 1201 gagtacgcca ccagctgctc cgctgctgcg caaaaaggcg caggggcagg cgccgggaca 1261 cagcagcagt agctcatcca aaacggaacg tcgccgccgc ttccaaacgt ttccacagcc 1321 tcagctgcag ctccaagctc agtcaatgga ttgtagcgaa ctttatgact tcttaagctc 1381 tagttccctg agctcgtcca ccgatagcga ggcggaagta ggtggtcatc gacggcacga 1441 caccgatcgc gagggcgacg atgaactcac cgactggccg ggaaacgaat tcggacccgg 1501 agccagatac gatccaaaaa ggaagcttac aaaaaaatca ctactgcctc aaattcgctc 1561 ggatgacaca attggagaag atgacactct tatgtctggc accgaagcgg gagcggtggg 1621 tatggaaccg ccttcgaagt ctccagtcca acttccagaa tctcttcagg atctttcccg 1681 cttccaacca gccggcgtct ccgagcctat cgagattcag aatgcctgct cagagatgga 1741 aacaaatgca gatggcacca tgccggcttc ccgccaaatc gagagtgaga tgtccggcga 1801 aacctctaat ccgtttcttt cctcgtcgcc tcctggacac gcccagggac aggaagtacg 1861 tgagatacga gcagggtgtc gccgcatcaa tggcgagcgt ccaggattca gcatcaagat 1921 gagcgtcaat gagcgcatcg cccgattttt gcaggattcg caacagacac agatccgttt 1981 gccggatata gagctttatg agaccgatag catgagtaat ctggccacgc tctattcact 2041 taccatggtg gtagagcacg gatgtacagt gctcaccaaa accgggaaca ctacgcagac 2101 ggtgagcatg gatcatcttc aacaaggtct gcagccgcgt gcagatctct ttggcgattt 2161 taagcggcgc tgctacggtg aggagggaga ggaggaagga gagcagcagc agccgcttca 2221 gcaagatccc ggccagattt agccccagaa agcaacacta taatccaaac aagaccaatc 2281 cctagcaaat gcaaacgtac agccatcagc actcgaggtg aaactcttgg catacgcttg 2341 catttctagg gtggaagaaa cccttaatct atgaatgctt ttagcttgtt tttgtgaaat 2401 ctgttccatg tacataagtt gcatcggtcc gtgtatatac taactgactt cgttagggaa 2461 tggcgccagc aagacggata ccggatccca gatcccgtcg gtttgggctc acgcttggaa 2521 gcgagcgaga tgacacgttt cagagacaga gagagaggac cgaccgaaag ccgtcggcag 2581 ccgttccact gtacaaaata tttaatgtaa gaccttcagc gaatatgaat ataagaaata 2641 tatatgtgtg gtcatatccg gaat