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LOCUS NM_130615 2157 bp mRNA linear INV 26-DEC-2023 D (CG4313), mRNA. ACCESSION NM_130615 VERSION NM_130615.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2157) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2157) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2157) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2157) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2157) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2157) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2157) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2157) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2157) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2157) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2157) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2157) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2157) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2157) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2157) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2157) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2157) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2157) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2157) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2157) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2157) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2157) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2157) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_130615.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2157 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2157 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /map="2C7-2C8" /db_xref="FLYBASE:FBgn0025632" /db_xref="GeneID:31169" CDS 63..1688 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="CG4313 gene product from transcript CG4313-RD; CG4313-PD" /codon_start=1 /product="uncharacterized protein, isoform D" /protein_id="NP_569971.3" /db_xref="FLYBASE:FBpp0309107" /db_xref="GeneID:31169" /db_xref="FLYBASE:FBgn0025632" /translation="MFPPKSGPTPHPISIALPLSDPYATDHMADQDAVLPVPLSDSLD LDVDVDLNLNMNLNLNVDDRRQVLFEGYSDELLTIAWVACIVFIIVGVPGNLLTIVAL SRGRQTRNSTAIFIINLSCSDLLFGCFNLPLAASTFKERAWTHSDLLCRLFPMLRYGL LAVSLLSVSLITINRYIIIAHPRQYPRIYQRRYLALMVAGTWITTFSIMIPTWRGVWG IFGLDVSIGSCSIMHDRYGRSPKEFLFIAAFMVPCICIVICYARIFLLVRKAAIRAGT AGKTNVSDVTPSSAPQHQIQAMATPKKPEKVTTSSGEANEPIAGRPFVVEENLAYIDD NASTDSLPISYSIRRRDQDQQPPPVDANVVLKEREKERDRDQEKVSLGRSQTQLEMGK THGKNPITTSLRTTSFTRFSPRKSHYASMGNTSNASSIYPGRMSAKDRRLLKMILVIF VWFVICYLPITVAKIWKSATEVHWFNIAGYLLIYLTTCINPLIYVLMSSEYRRAYWNL LRCHGSPDTQKQRNQANAKRKHLESNRQVKATT" misc_feature 294..1577 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="G protein-coupled receptor 84 and similar proteins, member of the class A family of seven-transmembrane G protein-coupled receptors; Region: 7tmA_GPR84-like; cd15210" /db_xref="CDD:320338" misc_feature 297..377 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:320338" misc_feature 396..467 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:320338" misc_feature order(462..464,471..476,510..527,531..536,543..545, 678..680,684..698,771..773,780..788,792..800,804..809, 1431..1433,1440..1445,1449..1454,1461..1463,1476..1481, 1485..1493,1500..1502,1509..1514) /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="putative ligand binding pocket [chemical binding]; other site" /db_xref="CDD:320338" misc_feature 510..602 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:320338" misc_feature 642..698 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320338" misc_feature 771..848 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320338" misc_feature 1371..1463 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320338" misc_feature 1479..1556 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320338" ORIGIN 1 ttagtacaaa ttcggcgcag gaacgagcaa cgcgtctttt gccgaacaca aagtgccgcg 61 cgatgttccc accaaaatcc ggaccaactc cgcatccgat ctcgatagcg ctgcctcttt 121 cggatcccta tgctactgat cacatggcgg atcaggacgc ggtgttgccg gtaccccttt 181 ccgacagcct ggacctggac gtggacgtgg acctcaatct gaatatgaat cttaatctca 241 atgtagacga caggcgccag gtgctcttcg agggctattc ggacgagctg ctgaccatcg 301 cctgggtggc ctgcatagtg ttcatcattg tgggcgttcc cggaaattta ctgaccatag 361 tggccctgtc gcgaggtcgt caaacccgca actccacggc catattcata atcaatttgt 421 cctgctcgga tctactcttt ggctgcttta atctgccatt ggccgcgtcc actttcaagg 481 agcgggcgtg gacccatagt gatctgctgt gcaggttgtt tccgatgctg cgctacggct 541 tgctggcggt gtccctgctc tccgtgtcgc tgatcaccat caaccggtac atcattatcg 601 cccatcccag gcagtatcca agaatttacc agcgacgata tttggctttg atggtagccg 661 gcacatggat caccacgttt tccataatga tacccacctg gcggggcgta tggggtatct 721 ttggcttgga cgtcagcatc ggctcgtgtt ccatcatgca tgatcggtat ggtagatccc 781 ccaaggagtt cctcttcatc gccgccttca tggtgccgtg catctgcatc gtgatctgtt 841 atgcccgaat cttcctgctg gtgcgaaagg cggccattcg cgcgggaacc gctggcaaga 901 ccaatgtcag cgatgtgact cccagctccg cgccgcagca tcagattcaa gccatggcca 961 caccaaagaa gccggagaag gtgaccacgt ccagcggcga ggcgaacgaa ccgatcgcag 1021 gacgaccctt tgtggtggag gaaaacttag cgtatatcga tgacaatgct tcgacggaca 1081 gtctgccgat ctcgtacagc atacggagga gggatcagga ccagcagcca ccgcctgttg 1141 atgccaatgt ggtgctcaag gagcgggaga aggaaaggga tcgggatcag gaaaaggtca 1201 gcctgggacg cagtcaaacg caactagaga tgggcaaaac ccatggaaag aaccctatca 1261 ctacatccct gcgcaccacc tccttcacac ggtttagccc gcggaaatcc cactacgcct 1321 ccatgggcaa tacctcaaat gcatcctcta tttacccggg aaggatgagt gccaaggacc 1381 ggagattgct taagatgata ctggtaatct tcgtgtggtt tgtaatttgt tatttgccca 1441 tcacggtggc caaaatatgg aaaagcgcca ccgaggtgca ctggttcaac attgctggct 1501 atctacttat ctacttgacc acctgcatca acccgctgat ctacgtgttg atgagctccg 1561 aataccgaag agcttactgg aacttgctgc gctgccatgg ctctccagat acccagaagc 1621 agcggaatca ggccaatgca aagcgaaagc acctggagtc caatcggcag gtgaaggcca 1681 cgacgtgact ccgacagatg ccttaacacc ttcatcgtcc tccgtcctag cgggatatga 1741 tatatgtgtg ccatatggta gtaatacgat gggagaagta cccaaatgtc atgttgaatg 1801 atctgcggta agaaaaaatt ccttgatccc ctggtgatta tagtgcctcc aaaaaagatt 1861 tctagtcaca tgatccggcc ggtcgtccct tccacgcaca cacgaaaaca cagatcaccc 1921 atatatatct atatctatat ctatataatg taggaactcc agaagtatat tgcattttat 1981 accaaatgac tttaatatct ggtttacatt tgaattccat gtttaagaac aatcgatgtt 2041 tgtttaaatt ttgttttttt tttctttgct tgtcgctaat tattgtacca atacataata 2101 gatatatcct tatatggata cgccctttct atgcccccaa taaatgcttc gaataat