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LOCUS NM_130596 2543 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_130596 VERSION NM_130596.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2543) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2543) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2543) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2543) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2543) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2543) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2543) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2543) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2543) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2543) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2543) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2543) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2543) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2543) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2543) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2543) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2543) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2543) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2543) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2543) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2543) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2543) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2543) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_130596.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2543 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2543 /gene="Vps26" /locus_tag="Dmel_CG14804" /gene_synonym="131F2S; anon-sts13; CG14804; Dmel\CG14804; DmVps26; dvps26; dVps26; Dvps26; EG:63B12.8; ESTS:131F2S; vps26; VPS26" /note="Vacuolar protein sorting 26" /map="2B13-2B13" /db_xref="FLYBASE:FBgn0014411" /db_xref="GeneID:31144" CDS 286..1722 /gene="Vps26" /locus_tag="Dmel_CG14804" /gene_synonym="131F2S; anon-sts13; CG14804; Dmel\CG14804; DmVps26; dvps26; dVps26; Dvps26; EG:63B12.8; ESTS:131F2S; vps26; VPS26" /note="CG14804 gene product from transcript CG14804-RA; CG14804-PA; Vps26-PA" /codon_start=1 /product="vacuolar protein sorting 26" /protein_id="NP_569952.2" /db_xref="FLYBASE:FBpp0070298" /db_xref="GeneID:31144" /db_xref="FLYBASE:FBgn0014411" /translation="MNFLGFGQSADIEIVFDGAEHKTAEVKGEDGKVEKMLLFYDGET VSGKVNVTLKKPGSKLEHQGIKIEFIGQIELYYDRGNHHEFKCLAKALARPGDLIQNN SYPFDFPKVEKQFEVYAGSNVRLRYFLRATIVRRISDITKEVDIAVHTLCSYPEMNNP IKMEVGIEDCLHIEFEYNKSKYHLRDTIIGKIYFLLVRIKIKHMEIAIIKKESTGTGP TMFNENETIAKYEIMDGAPVKGESIPIRVFLAGYNLTPTMRDINKKFSVKYFLNLVLM DTEDRRYFKQQEITLWRKADKPRYHGAQQHQQQQHQHVPLHAPPHLVSGPAAPTVAHS LISSSTDSGEVGGAPTAPGTAGSESKMGLFTRESPNQEFSQQQMDSPPLTPTPSTASV AVAVPTAASSVSEPAPERGIGDGAAAATTSASPVAMLSSSPPPLLPVSPLSRSETEAS EQVQPEDEDLDAITPNTKKTGATPLATD" misc_feature 301..1125 /gene="Vps26" /locus_tag="Dmel_CG14804" /gene_synonym="131F2S; anon-sts13; CG14804; Dmel\CG14804; DmVps26; dvps26; dVps26; Dvps26; EG:63B12.8; ESTS:131F2S; vps26; VPS26" /note="Vacuolar protein sorting-associated protein 26; Region: Vps26; pfam03643" /db_xref="CDD:397622" misc_feature <1234..>1509 /gene="Vps26" /locus_tag="Dmel_CG14804" /gene_synonym="131F2S; anon-sts13; CG14804; Dmel\CG14804; DmVps26; dvps26; dVps26; Dvps26; EG:63B12.8; ESTS:131F2S; vps26; VPS26" /note="Herpes virus major outer envelope glycoprotein (BLLF1); Region: Herpes_BLLF1; pfam05109" /db_xref="CDD:282904" ORIGIN 1 caggttgacg cgatatggca acgccgtagt gtgaaaaatt gcaatttttt tcatttcaca 61 cacacagacg cgacagatac gccagcatcg gaacgaagga cgtaaaaagg ccgcagaaaa 121 acgcctatca aagctgaggt ttattgaagg ggttatcaga aagatatctc taggaaaagc 181 cgccaacagg agtcacagcg tcgacattcc atcggagcag caagaagcag aggcgggggc 241 aataagaaac ggaagaagaa gaagccgatt cgacgtttat caattatgaa tttcctggga 301 ttcggccagt cagcggacat tgagatagtc tttgatggag ctgagcacaa gacggcagag 361 gttaaagggg aggacggcaa agtggagaag atgctgctat tctacgacgg ggagacggta 421 tccggcaagg tgaacgtgac cctcaagaag ccgggcagca agctggagca ccagggcatt 481 aagatcgaat tcattggcca gatcgaactg tactacgacc ggggtaacca ccacgaattc 541 aagtgtctag cgaaggccct ggcccgcccg ggcgatctca tccagaacaa cagctatcca 601 ttcgatttcc ccaaagtgga gaagcaattc gaggtgtacg ccggctcgaa cgtgcggttg 661 cggtacttcc tgcgcgcaac catcgtcagg cggatcagcg acataacgaa ggaggtcgac 721 atcgccgtgc acacactgtg cagctacccg gagatgaaca accccatcaa gatggaggta 781 ggcatcgaag actgcctgca catcgaattc gagtataaca aaagcaagta ccacctgcgg 841 gacacgatta tcggcaagat ctacttcctg ttggtgcgca ttaagatcaa gcacatggag 901 attgcgatca tcaagaagga gagcacgggc acgggcccca ccatgtttaa cgaaaacgaa 961 acgattgcca agtacgagat catggacgga gcgcccgtca aaggcgagag catacccatc 1021 cgggtctttc ttgctggcta caatctcacg ccgaccatgc gggacattaa caagaagttc 1081 tcagtcaagt atttcctcaa ccttgtgctg atggacaccg aggaccggcg ctacttcaaa 1141 caacaggaga tcacgctgtg gcgcaaggca gacaaaccgc gttaccatgg cgctcagcag 1201 caccagcaac agcagcacca acacgttccc ctgcacgctc cgccgcacct ggtcagcggt 1261 cctgctgcgc ccacagtggc tcactcgctg atcagctcga gcacggacag cggagaggtg 1321 ggaggagcac cgacagcgcc gggcactgca ggatctgagt ccaagatggg tctgtttacc 1381 agggagagcc ccaaccagga gttcagccaa cagcaaatgg attctccgcc gctgacgccc 1441 acgccgtcga ccgcatccgt tgcagttgca gtccccacag cggcgtcatc tgtttcagaa 1501 ccagctcccg agcggggcat aggcgatgga gccgcagcgg ccaccacaag cgcctcgccc 1561 gtagctatgc tctccagttc gccaccgcca ttgctgccag tatcgccgct ctcccgatcg 1621 gaaactgaag cgtcggagca agtacaaccg gaggatgagg acctcgatgc aattacgccc 1681 aatacgaaaa agaccggtgc aacgccgttg gccaccgatt gagtgggaag ctggagagga 1741 tttccatctt cagggggata agtagtaaca gccagagcta gggcaacaac agaaggcgga 1801 actattacgc atatattcgt attcgtatac agcagcagga aggcagttca gcagcagcaa 1861 caaatatgca tatatctatt tttttaaagt taatttaaaa ttgttacaaa tgttttattg 1921 aggttatgcg catcattaac caaaagcagg caaatcgcaa atgatagtaa caaaaaaaca 1981 aaacgaaact taggacaaat gagaagaggc aacctcgtag ctacaaccaa tctcttggcg 2041 tttccattgg tattattgct ataacaagtc gagaagctgt cgagaggcgc gcgactcgga 2101 cacgaaagca aaccctaatc ccctgcgccc caaaactagt taaactccct agtattccga 2161 tgaccattcc ctatccttgt ggcgtttgga aaatatgatt tttcaatttg aaaaatgttg 2221 aaattgcttt ctaaaagtga gacccctgaa ttgaaattta agtgtgcatt aaactaaacc 2281 aactccaata caaatgaaga tgaagcagca aacagcagac aaaacatcca ttaaataata 2341 aagttttagt ctatagcgta ctaacgaatt gatgctggga gcgttctgat aatggcgatt 2401 tgtccgagcg atcggaagtg gaaacgacga aacgtgttac atgccttgca tatgtacata 2461 acagttcata tacataacat acaagaatta ttgatatata cacttagaca cgcaatttaa 2521 caaataaaag cgatatgagc gcc