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LOCUS NM_130570 3254 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_130570 VERSION NM_130570.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3254) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3254) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3254) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3254) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3254) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3254) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3254) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3254) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3254) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3254) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3254) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3254) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3254) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3254) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3254) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3254) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3254) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3254) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3254) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3254) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3254) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3254) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3254) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_130570.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3254 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3254 /gene="inc" /locus_tag="Dmel_CG32810" /gene_synonym="CG14783; CG14784; CG32810; Dmel\CG32810; EG:196F3.2; INC; ins" /note="insomniac" /map="2B1-2B1" /db_xref="FLYBASE:FBgn0025394" /db_xref="GeneID:31110" CDS 394..1029 /gene="inc" /locus_tag="Dmel_CG32810" /gene_synonym="CG14783; CG14784; CG32810; Dmel\CG32810; EG:196F3.2; INC; ins" /note="CG32810 gene product from transcript CG32810-RB; CG32810-PB; inc-PB; insomniac" /codon_start=1 /product="insomniac, isoform B" /protein_id="NP_569926.2" /db_xref="FLYBASE:FBpp0070250" /db_xref="GeneID:31110" /db_xref="FLYBASE:FBgn0025394" /translation="MSTVFINSRKSPNVLKKQGTDQWVKLNVGGTYFLTTKTTLSRDP NSFLSRLIQEDCDLISDRDETGAYLIDRDPKYFAPVLNYLRHGKLVLDGVSEEGVLEE AEFYNVTQLIALLKECILHRDQRPQTDKKRVYRVLQCREQELTQMISTLSDGWRFEQL ISMQYTNYGPFENNEFLCVVSKECGTTAGRELELNDRAKVLQQKGSRILGI" misc_feature 460..711 /gene="inc" /locus_tag="Dmel_CG32810" /gene_synonym="CG14783; CG14784; CG32810; Dmel\CG32810; EG:196F3.2; INC; ins" /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing proteins KCTD2, KCTD5, and KCTD17, and similar proteins; Region: BTB_POZ_KCTD2-like; cd18362" /db_xref="CDD:349671" misc_feature order(460..462,472..474,478..483,490..501,508..510, 574..576,598..612,619..621,637..639,646..651,655..657, 661..669,670..675,679..681,685..687,694..696) /gene="inc" /locus_tag="Dmel_CG32810" /gene_synonym="CG14783; CG14784; CG32810; Dmel\CG32810; EG:196F3.2; INC; ins" /note="pentamer interface [polypeptide binding]; other site" /db_xref="CDD:349671" ORIGIN 1 cagacatcgg cagacgcatg ctatcgataa cggtcttgtt tattaatgaa ttaattaatt 61 agtccaagtt aactaaaaaa agtcgaaaaa cagcgaaatc ggcgtagtca gcgtgcccaa 121 gtggagtacc cccagcgaac agaggcagcg acagagtgca agagtgcaag agcaagacgc 181 agtcgaaggc caggccacaa ggcgcagcaa cgcaacaaag acgcaagcga agaagaaaag 241 catgagctga ggctgtcgtc gccagcaagc aagggaatcg cgcggacaat aagagtagga 301 gcaggagcag gagtaggaca ggagtgggag cacgagcagc aaaggagcac caacccagcg 361 gagcacccga accgcagcag cggcaacacc atcatgagca cggtgttcat aaactcgcgc 421 aagagcccca acgtgctgaa aaaacagggc accgaccagt gggtcaagct gaacgtaggc 481 ggtacctact tcctcaccac aaagacgacg ctctcccgtg acccaaattc gttcctctcc 541 cgtctgattc aggaggactg cgacttgata tcagatcggg acgagacagg agcctacctg 601 atcgacagag accccaaata ctttgcaccc gtgctcaatt acctgcgcca cggcaagctt 661 gtgctcgatg gcgtctcaga ggaaggcgtc ctggaggagg ctgagttcta caacgtgacg 721 cagctgatag cgctgctgaa ggagtgcatc ctgcacaggg atcagcgacc ccaaacggac 781 aagaagcgcg tttatcgtgt gctgcagtgc cgcgagcagg aactaaccca gatgatctca 841 acgctgtcgg atggctggag gttcgagcag ctgatcagca tgcagtacac gaactacggg 901 cccttcgaaa acaatgagtt cctgtgcgtg gtatccaaag agtgtggcac aacggccggc 961 cgggagctgg agctcaacga ccgggccaag gtcctgcagc agaagggatc gcgaattctt 1021 ggaatttaat cgcgctatat attcacacac aacccttgaa aatttaaata ccgaacttca 1081 tcaacataca actcattccc aatcagtaac acaatcagcc actcagccac accgacccaa 1141 caccaattgg atgcagccaa ggaagcccga gccacagcca cagccacatc aaacaccaca 1201 aaccacacgc gatcagatca gactcagcca caggcacaga tcacccacca agatcagccg 1261 gaatcaccaa agcagagccc gcagggagac tacgcttcat ttgcattcga gacaaagtta 1321 acaggtacca ctgcgattcg attctcgccc ttgtggccgt tttgcgcact gtacgaagtg 1381 tgtgcgggcg tgcatgtgtt caacttgtag taaaccagat agacccgact gtacgagcaa 1441 caagaaacca gccctgcttc gttgcgccca atagccaggc ggctgaatta gactcagttt 1501 cgagcttaag ctttgcttca agtggcacgc gcgaaccagc cagccagcca gccagtcagt 1561 cagtcagtta gccagacatt tagcagagga tccttccgag ccgctgggct actgggacac 1621 tcaataagct aggtatatac acatttagcg ggagtttgta gggttagtct tagtagtttt 1681 tatcgtgctt acaataacga ccctgacgac gcagcggaca cttcgctgga gcagtcgcga 1741 ttcccttggt taagcaccca actaacttac agtaccgcac taggttcgag ctgcatttac 1801 gtgtccgata ccgataccga taccaatacc aataccaggc cctctgcacc cgaaatccga 1861 gtcccccgga atttgtagag tcgcagagtt ctgctccgta gttctgctgc ttgctgtact 1921 cttgaactgg tgagcggtag gagcgtacgt gtggtccgtt ttgtgtaggc ccggttttac 1981 taccttgagc tttattttag aaaacgagca aggcgaagat caactttagg aaatcaattg 2041 aatcacgact gaatttatgt gaacttgcac tcaaagaaaa tacatacatg cgaatacatt 2101 atagtgagga tatacatgtg tgaaaaagaa aatgattaac gaaaatgaaa acctatccgg 2161 cgacgttttg tacagacagg catgatatct ataatatgat aagtactaca tgaatgtata 2221 taattttaaa tagttactaa tttatacacg aaaaagaaaa caagcgaaaa ttgaagatga 2281 tccagaacgt cgccacctac tcgtacccat tttgtatcca ttttgactta ttttacgagc 2341 acagctggtg cagattatat agagtataac ttatgcttac gaggattatt tcgacgaaga 2401 acctttacac tagcaagtag tagaaccgca gcgcccgatt acgccggacg cagtgtctgg 2461 cacttagcaa tacagagaaa ggccactgca agttagtaca gacacggcaa caagtacaga 2521 taactcttaa ctctaacaat aatacgatag catagcctaa cccctactgt aactccataa 2581 ggatgtactc atacccactt taaacagcct gtgccccgta ccttgtaccc tgtatcctgt 2641 atcctgtatt ctgcagccgc ggatgctcag tcccgcccag aacccggctg tcgctggagc 2701 tggagctgga tcggatcctg gatgctgctc cctcaaataa tatgaatata tatgaataaa 2761 cttggaaccc ttttctaaaa aacatcccca agcagcttcg tcctgtgaat gcgctttgtg 2821 ctttaaagcc ttccgaaaaa gctcaagtgc gggaactggt taaggatttt acagaagcag 2881 tatgacaatc agcagttcag tggtctccgg attcgtgttg gtggtgagcc atactcccgg 2941 gattatcaag gacgcacaac ccgaagcccg ataatataag ctttaaagga acaaagcttc 3001 ggaagtgcga agcaatgtac caaacttcag caaggacact tcaaaagcgt tctttacttc 3061 taatatctta aattttcttg tttaagtttt tatatatgat aattgtatat ttatgttatt 3121 aatgtgcatg tcccccgggc aaatttagat ctttcctgct ggtatcctgc tggccgccac 3181 gagaaaactg gtggctcaga atcctaagtc ttggacaaat tcgaagctaa taaaagtgct 3241 ttaaggaacc agct