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LOCUS NM_130552 2945 bp mRNA linear INV 26-DEC-2023 variant D, mRNA. ACCESSION NM_130552 VERSION NM_130552.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2945) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2945) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2945) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2945) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2945) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2945) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2945) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2945) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2945) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2945) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2945) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2945) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2945) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2945) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2945) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2945) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2945) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2945) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2945) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2945) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2945) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2945) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2945) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_130552.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2945 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2945 /gene="ssx" /locus_tag="Dmel_CG3056" /gene_synonym="anon-EST:Posey102; cg3056; CG3056; Dmel\CG3056; EG:132E8.1; Ssx" /note="sister-of-Sex-lethal" /map="2A1-2A1" /db_xref="FLYBASE:FBgn0024987" /db_xref="GeneID:31086" CDS 162..1619 /gene="ssx" /locus_tag="Dmel_CG3056" /gene_synonym="anon-EST:Posey102; cg3056; CG3056; Dmel\CG3056; EG:132E8.1; Ssx" /note="CG3056 gene product from transcript CG3056-RD; CG3056-PD; ssx-PD" /codon_start=1 /product="sister-of-Sex-lethal, isoform D" /protein_id="NP_569908.1" /db_xref="FLYBASE:FBpp0308820" /db_xref="GeneID:31086" /db_xref="FLYBASE:FBgn0024987" /translation="MSNADKMQDQEHDDEQSSDIEGSGDNVGRDDGTDDDDDSNGNMQ QENGDGGNGGDGQEHSGDEEQHHSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYLPQ DMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYVR NKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGR PRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAAQFMAQIGGGN GGGGGGPPHMGPGGPMHPPHHHNNHHHNNHHNPHMPPHHHQPQHPHQHPQHHPQLHHM QHHHPNNHNNNHPNNHHHNNNNNNHHNMGGPHPHHMQQMHPMGMNMGMGVNMGMGMGM GMPIHGGGGGGGGGGGGGGGGNFHHMAHRGEVFMLPLPICSRFPSQPHPVGNGICHSP NKNSRFRLSRRPQASRTTIRYIAHSVADPVPTPTT" misc_feature <387..977 /gene="ssx" /locus_tag="Dmel_CG3056" /gene_synonym="anon-EST:Posey102; cg3056; CG3056; Dmel\CG3056; EG:132E8.1; Ssx" /note="sex-lethal family splicing factor; Region: sex-lethal; TIGR01659" /db_xref="CDD:273740" ORIGIN 1 ttccattgta tatcgtttgg aaacgcaaga agtgcacaaa actcgctgct ttccggtgca 61 gtttgtgaag aagtttgcta aaaactcgtg gcgccaactg cgacgcaaac acgcaagaaa 121 cccagacaaa caggagctat caaggcttga cacagaaggt catgtccaac gcggataaga 181 tgcaggacca ggagcacgac gacgagcagt cctccgacat agagggatcc ggcgacaatg 241 tgggccgtga tgacggcacc gacgatgacg acgacagcaa cggcaacatg cagcaggaga 301 atggagatgg cggcaacggt ggcgacggcc aggagcactc tggcgacgag gagcaacacc 361 acagccagga caacgagggc aacgataact ccgcaggcca acagcagcaa atgcagcaag 421 tggaccgaac cagcgccacc aatctgatca tcaattactt gccacaggac atgaccgacc 481 gcgaactgta caacctcttt agcggctgcg ggcccatcaa cacctgcaag ataatgcgcg 541 acttcaagac cggatatagc ttcggctacg gcttcgtgga ctacaaaacg gagtcggact 601 cggaggacgc catccagaag ctaaatggct tctatgtgcg caacaagcga ttaaaggtgt 661 cgtatgctcg accgggtggg cagtccatta aggatacgaa tttgtacgtc atcaacctgt 721 cgcgaaacat caacgacgac atgctcgacc gcatcttctc gccctatggc ctgattgttc 781 agcgaaacat cctgcgggat aagctcactg gacgaccgcg cggcgttgct tttgtgcgtt 841 acaataagcg cgaggaagct caagaggcga tcaaggcgct gaacaacacg gtgccggagg 901 gcggatccca gccaatctgg gtacgactcg ccgaggaaca cggcaaggcc aaggcggccc 961 agtttatggc ccagatcgga ggtggcaatg gtggcggagg cggtggtccg ccccacatgg 1021 gcccaggtgg accgatgcac ccacctcatc accacaataa tcaccatcac aacaaccacc 1081 acaatccgca tatgccgccg catcatcatc agccgcagca tccacaccag catccgcagc 1141 accatccgca gctgcaccac atgcagcacc accatcccaa caaccacaac aacaatcacc 1201 ccaacaacca ccatcataac aacaacaaca acaaccacca caacatgggc ggcccgcatc 1261 cgcaccacat gcagcaaatg cacccgatgg gcatgaacat gggcatgggc gtaaacatgg 1321 gaatgggcat gggcatgggc atgcccattc acggaggcgg cggtggtggt ggtggcggcg 1381 gcggtggagg cggtggtggt aacttccacc acatggcgca cagaggtgaa gtgttcatgc 1441 tgccattgcc gatttgcagc cgattcccca gccagccgca tcccgtaggc aatggcattt 1501 gccacagccc caacaagaac agcagattcc gtttaagccg ccgcccgcaa gcctccagaa 1561 caaccatcag atatattgcg cattcggtgg cagatcccgt tcccactccg actacctagt 1621 gccgctctac tttccagccc ccgcccatcc atcagttgtt tccatctcct cgccagctgc 1681 gtcactttcg gcctacccag ctgttttggc cgtgtatgtt ccggtatatg tcacggttcc 1741 ggtctctctt cctgttacca tgaacagagc cagtccacaa gcttaaagtg agtgcagacg 1801 gaggcggcgg aggcggtggc cacatggtag aagcgagtag aaatagattg agtgcaatcg 1861 gaggagggaa gaggagatat tacccagaag cgatatccaa tagtagccaa ctctctcgct 1921 ctctatgtgt atgtatgtat cttgctatcc atatatgtat atccatatca gagagccagg 1981 attggttgag accatacgat ataacccgaa accacactgg ccaggaatag caaatccaag 2041 cattggcagc aagaggcaaa gcaaaggtgc acggcagaca taggcagtac cacaagaaca 2101 ctatcacaga attaagcaga gcaaattaaa gatgcatagc gtgtattaag atgtacgaaa 2161 taatgttcca aagttaacca gcctacacaa tccccaacaa cacacacaca cacacacata 2221 aagacggtcg gagtcgaatc cttgatcgaa ccacataaga aaaaattcca atgagtttgt 2281 atgagcaaca tacaaagccc caaacgcaaa ccatcagcca ctcaagacga gacgagaacg 2341 caaccaaaac tcaaatataa ctttcctgca ctcatctcca gttcacgaaa caatcttcgc 2401 tcttggtgga ttgcgaattg taaatgaatt gagtaactgc acggatgcaa agccccaaga 2461 tgtggcgact attccggccg gacactgtga gacggacgtt acacacacgg atatatagag 2521 agacgaacct tatgacaaca gacagaagac gcttgctctg aatagatggt taatttgtag 2581 acttataagg aacgtcgaca gcgagggttc gttcgcgtca cttgcttttt actacattat 2641 aaataaatta ttgatgtact accaacaaac caagaacaag aacaccacac tatacaaaca 2701 cctatatatt agataatata tatgaatgat gtataaatac ccgaacttcg ggtaaacttc 2761 caacagaaac ccgacaagaa gatggctgaa tatgaaataa acttgaaatt ttccaaccag 2821 catacccgtg agacccagag gtccgaaatt tttttttttt agtattgata atctctaaac 2881 gtaaatccta gtctcgtagc aatatcatag ttaaggtgac ttttttttca gaataaactt 2941 aaagc