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LOCUS NM_130550 2460 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_130550 VERSION NM_130550.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2460) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2460) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2460) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2460) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2460) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2460) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2460) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2460) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2460) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2460) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2460) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2460) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2460) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2460) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2460) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2460) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2460) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2460) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2460) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2460) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2460) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2460) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2460) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_130550.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2460 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2460 /gene="CG11417" /locus_tag="Dmel_CG11417" /gene_synonym="Dmel\CG11417; EG:8D8.4" /map="1F4-1F4" /db_xref="FLYBASE:FBgn0024364" /db_xref="GeneID:31083" CDS 82..2397 /gene="CG11417" /locus_tag="Dmel_CG11417" /gene_synonym="Dmel\CG11417; EG:8D8.4" /note="CG11417 gene product from transcript CG11417-RA; CG11417-PA" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_569906.1" /db_xref="FLYBASE:FBpp0070205" /db_xref="GeneID:31083" /db_xref="FLYBASE:FBgn0024364" /translation="MGKKKDKSGKLDKQTTKKEAPSSSQANMGKAAGANDSENGIWQD SRFQHLLTDPRFRGVPKVQRKVKIDKRFQGMFTDDKFKVKYTVDKYGRPVNKSNAEDL RKFYELDENESSSGEEPAKKESDLDSEAEAEQQERRAEERAIANLEKEESNDTLESDS SEVSQSLRQRLTNPEIDYARGEGRLYTDSSSDEDSDDEDEGPELQIDHVWGELDNDAE HTEESTRRLAVCNMDWDRIRAEDLMVMLSSFLPPGGSILSVKIYPSEFGKARMAEEEV HGPKELVERVEPEDDSDEELVRQQDSDAEEGEDYHMEKLRQYQLNRLRYYYAVVECDS IDTADKVYKECDGIEYESSATRVDLRFIPDDTSFEEDTPSDECFELPDASSYKPRQFT TTALQQAKVDLTWDETALDRRELGDKLSSGQVDKLTDKELRQIVAYSSEEEDSEAEES PAEEAAQKAVSEDPQKSKPKKTSKQERIATYKNLLADILEQEKKEKEQKYEMEMTWNV EPQHEEAQPEQQAQAELTPIEKVIQKRSEKNRQRKEQRRQRQIEARGGDAGEDSDESM VPDGIDLNDAYFAEEFANGDYAPPKTKQDKKKKKKKGKDDGEEDVEAKRQEKELELLL DDGDGRDEKQHFSLTKILKKEEQEASGSKRKRRQKLKKSKNQPQNAEKLDDDFQVNLN DNRFSAVYKSHEYNIDPTHSHYKPTKGMQQIIGEKLKRRKEQGEGGAANGDADGDEQV APKRSKQQLEQNALVKSLKRKIQLQQQGQKL" misc_feature 211..2370 /gene="CG11417" /locus_tag="Dmel_CG11417" /gene_synonym="Dmel\CG11417; EG:8D8.4" /note="Uncharacterized conserved protein [Function unknown]; Region: COG5638" /db_xref="CDD:227925" ORIGIN 1 catccgatat cgataaccaa accggtgtga cgcgccgcac gtgcttacgt tttgtttgta 61 ttttactggg ctcctcggga aatgggcaag aagaaggaca agtccgggaa gctggacaag 121 cagacgacga agaaggaggc accgagctcg tcgcaggcca acatggggaa ggcagctgga 181 gccaatgatt cggagaacgg aatttggcag gactctcggt tccagcacct gctgaccgat 241 ccccgatttc gcggcgttcc aaaagtgcag cgaaaggtca agatcgacaa gcgtttccag 301 ggcatgttca cggacgacaa gttcaaggtg aagtacaccg tggacaagta cggccgcccg 361 gtcaacaaga gcaacgccga ggacctcaga aagttctacg aactggacga gaacgagagc 421 agcagcggcg aggagcctgc caaaaaggaa tccgatcttg actccgaggc ggaggcagag 481 caacaagagc ggcgcgccga ggagcgagcc atagccaact tggagaagga ggagagcaac 541 gatactctgg aaagcgatag ttccgaggtg tcacagagtc ttcgtcagcg cctgaccaac 601 ccagagatag actacgcccg cggagaaggc cgcctgtata ccgactcctc ctcagacgag 661 gacagcgatg atgaggacga gggtccagaa ctgcagatag accacgtgtg gggcgaactg 721 gacaacgatg ccgagcacac cgaggagagc acccgccggc tggctgtttg caacatggac 781 tgggaccgca tccgggccga ggatctaatg gtcatgctca gctccttcct gccgcccggc 841 ggtagcattc tcagcgtcaa gatatacccc tcagagttcg ggaaagcgcg catggccgag 901 gaggaagtgc acggcccaaa ggaactggtg gagcgcgtgg agccagaaga cgactccgat 961 gaggagctcg tacgccagca ggacagcgat gccgaagagg gggaggacta ccacatggag 1021 aagctgcgtc agtaccagct aaaccgactt cgctactact atgctgtcgt cgagtgcgac 1081 agcatagaca cggccgacaa ggtatacaag gagtgcgatg gtatcgagta cgagagctcc 1141 gccacgcgcg tggacttgcg cttcatcccg gacgacacct cgttcgagga ggacacgccg 1201 tcggacgaat gcttcgagct gccggatgcc agcagctata agccgcgaca gttcaccacc 1261 acggcgttgc agcaggccaa ggtggatcta acctgggacg agacggcgct ggaccgtcgt 1321 gagctgggtg acaagctctc cagcgggcag gttgacaagc tcacggacaa ggagctgcgc 1381 cagatagtag cgtacagtag tgaggaagag gattctgagg cagaggaatc cccggcggag 1441 gaggctgctc aaaaggcggt ttcagaggac ccacagaaga gcaagcccaa aaagacttct 1501 aagcaggaac gcattgccac ctacaaaaac ttgctggccg acatcctgga gcaggaaaag 1561 aaggagaagg agcagaagta cgaaatggaa atgacctgga acgtggagcc ccagcacgaa 1621 gaggcacagc cggagcagca agcccaggcc gagctcacgc ccatcgagaa ggtgatccag 1681 aaacgcagcg agaagaacag gcagcgcaag gaacagcgcc gccagcgcca gatcgaagcc 1741 agaggaggcg atgccggtga ggacagcgat gagtccatgg tgcccgatgg catcgatttg 1801 aatgacgcct atttcgccga ggagttcgct aatggagact acgctccccc taaaacgaag 1861 caggacaaga agaaaaagaa aaagaaggga aaggacgatg gagaggagga cgtcgaggcg 1921 aagcggcaag agaaggagct tgagctactg ctggacgatg gcgacgggcg cgacgagaag 1981 caacacttca gtctgaccaa aatcctcaag aaggaggagc aagaagcgag cggttcaaag 2041 cgaaagcgtc gtcagaagtt aaagaaatcg aaaaatcagc cgcagaatgc ggagaagctg 2101 gacgacgact tccaggtaaa cctgaatgat aatcgcttca gtgccgttta caagtcgcac 2161 gagtacaaca tcgatcccac ccactcccat tacaagccca ccaagggcat gcagcagatc 2221 atcggcgaga agttaaagcg cagaaaggag cagggggagg gcggcgctgc aaacggcgat 2281 gcggatgggg atgagcaggt agcccccaag aggagtaagc agcagctgga gcagaacgcc 2341 ctggtaaaga gtctgaagcg taagatccag ctgcagcagc agggccagaa gctttagagg 2401 attaatgtta ctgtacaata ggtgaacaaa tgtaaattaa agactacgtt aatgacattg