Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NM_130549 3623 bp mRNA linear INV 26-DEC-2023 A (CG12773), mRNA. ACCESSION NM_130549 VERSION NM_130549.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3623) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3623) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3623) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3623) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3623) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3623) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3623) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3623) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3623) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3623) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3623) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3623) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3623) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3623) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3623) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3623) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3623) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3623) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3623) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3623) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3623) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3623) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3623) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_130549.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3623 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3623 /gene="CG12773" /locus_tag="Dmel_CG12773" /gene_synonym="Dmel\CG12773; EG:8D8.3" /map="1F4-1F4" /db_xref="FLYBASE:FBgn0024365" /db_xref="GeneID:31082" CDS 494..2632 /gene="CG12773" /locus_tag="Dmel_CG12773" /gene_synonym="Dmel\CG12773; EG:8D8.3" /note="CG12773 gene product from transcript CG12773-RA; CG12773-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_569905.1" /db_xref="FLYBASE:FBpp0070226" /db_xref="GeneID:31082" /db_xref="FLYBASE:FBgn0024365" /translation="MTNSSEGNGNGGRRTVDWQRFGLGGDEDGDVAVTSFRQRTNNNT GGFVDLGNEYTYAAGGHHASGANEIFAGEQGDKPWWRSNFFISQPVLFGTWDGVFTSC LINVFGVIVFLRSGWIVAQAGILNAVLIIFCTVVIALVSVLSAIGICERCRVESGGVY FLIAHTLGSRFGGALGLLYCFGQAVGCALNVMGFGESMAGLVGLEGSKWAIRGFATAA VLLLGCINVAGVKWVIKLQFILLMILLISALDFMVGSFTSEASGGFNGWASGNFVENL WPKYDDGYSWFRVFGVFFPTVTGVLSGINMSGDLRAPSTDIPNGTLAAFGTSTFLYLV FVLFLGATCQRSFLYTDYMISVKVSAVHFLLLAGIYVSSMSSCLGAMYGTPRVLQSIA KESVIPGIDILGKGRGPNKVPLYAMAIVALVTVTFIIVGDINFLAPIVTMPFLLTYAC IDYAYFALAQTFDIQEQREERFRIQASSPSYETRRYGSVSDTGNDLDLLFPDRVRHKN LQSPQNSPLHQTVPLEFDNEGPSTSNQAQSSERRTGHEADTTLAVEQAVAQAGVEQDQ GDEAEPIAPIRPPIHSKTKNWYSGYCNRWASLLGAFTKLLVMLLVNWYYALTCFLVVF VVWFYVGTANPAVKPGLTAEFNFFAWLKSVIFRCFGKRMNEYEQIVVTPSCPGVDLSP TQLNEQNEDFRPRPNYHHSSVIEGRLIDDI" misc_feature 755..>1861 /gene="CG12773" /locus_tag="Dmel_CG12773" /gene_synonym="Dmel\CG12773; EG:8D8.3" /note="Amino acid permease; Region: AA_permease_2; cl45918" /db_xref="CDD:459263" ORIGIN 1 ctatcgtcta acgcatatcg cagcccaccg aaaagtcatc gatgacgact tcttgtagtt 61 taccaataag caagtgtttt tatttagctt tttgagcgtt tattgagtgc ggttacagtt 121 actcaagtgc gaccaagacg atgcccgccg tttcccgctt cggtcgccag tgactcgaat 181 ccagcgcctg cagcacctcc atcggatctg cgatcttcag aggattctcc actggctgcc 241 tgcgtggatg tgctcgcact tggacgtttg gatgtttggg tgtagcagtg ggagcgcaac 301 gccaagaaat agcaatcagt taattgccgc gattacgccc gagtagtcgt cagataaccc 361 gcgagaacag cacaacgcaa aaactgctca actccacggg agcagcagca acaacaaggc 421 cagcaaacaa ctgccaaaag cggtacggga aaagcggggt ggagcggagt gtgcggtgcg 481 aagcggagcg gagatgacta atagctctga gggcaatggc aacggcggcc gacgcactgt 541 cgactggcag agatttggac ttggcggcga cgaggacggg gatgtggcgg tgaccagctt 601 tcgccagcgg accaacaaca acaccggcgg atttgtggat ttaggtaacg agtacacgta 661 cgcggctggt ggccaccatg cgtccggggc caacgagatc tttgcgggcg agcagggcga 721 caagccgtgg tggcgctcga acttcttcat ctcccagccc gtgctattcg gcacctggga 781 cggagtgttc acctcctgcc taatcaacgt gtttggagtg atcgtgttcc tgcgatccgg 841 atggatcgtc gcacaggcag gcattctgaa cgcggtgctg atcatctttt gcacggtggt 901 catagctctc gtcagcgtcc tctcggcaat cggtatctgc gagcggtgcc gtgtggaaag 961 cggtggcgtg tactttctca tagcccacac gcttggttcc cgattcggag gcgccttggg 1021 tttgctctac tgctttggcc aggcggtggg atgcgccctt aacgtaatgg gatttggcga 1081 atcaatggct ggactagtgg gactcgaggg cagcaagtgg gccatccgcg ggttcgctac 1141 ggcagcggtg ctcctgttgg gctgcatcaa cgtggccggc gtcaagtggg tcatcaagct 1201 tcagtttata ctgctcatga tactgctgat ctcggcgctg gacttcatgg tgggcagctt 1261 cactagtgag gccagtggcg gctttaatgg ctgggcgagc ggaaacttcg tggagaacct 1321 atggccaaag tacgacgacg gctactcctg gttccgtgtg ttcggcgtct tctttcccac 1381 cgtcaccgga gtgctgtcgg gcattaacat gagcggcgac ttgcgcgcgc cgtccacgga 1441 cattcccaat ggcaccctgg ccgcctttgg cacctccacg ttcctgtact tggtgttcgt 1501 cctgtttttg ggggccacct gccaacgaag cttcctgtat actgactaca tgatctctgt 1561 caaggtgtct gccgtgcatt tcctgctgtt ggccggcatt tatgtgtcca gcatgtcctc 1621 ctgcctgggc gccatgtacg gcactccgcg cgtccttcag agcatcgcca aagagagcgt 1681 cattccgggc atcgatatcc tgggaaaggg tcgtggtccc aacaaagtgc ctttatacgc 1741 aatggccatc gtggccctag tcactgtcac cttcattatc gtgggagaca tcaacttctt 1801 ggcgccgatc gtgaccatgc ccttcctgct cacatatgcc tgtatcgact acgcctactt 1861 tgcgctggcc cagaccttcg acattcagga gcagcgcgag gagcgtttcc gcatccaggc 1921 gtcgagtccc agctacgaga cgcgccgtta cggcagtgtt tcggacacgg gcaacgacct 1981 ggacctcctg ttccctgatc gggtgcgcca caagaacctg cagagtccgc agaactcacc 2041 gctgcaccaa acagtgcccc tggagtttga caacgagggt cccagcacct ccaaccaggc 2101 ccagtcttcg gaacggagaa cggggcacga ggcggacacc acactggccg tggagcaggc 2161 agtcgcgcag gccggcgtcg aacaggacca gggcgacgag gccgaaccga tagccccgat 2221 ccgtccgccc atccactcca agacgaaaaa ctggtactcc ggctactgta atcgctgggc 2281 ctctctgctg ggggccttca ctaaactgct ggttatgctg ctagtcaact ggtactacgc 2341 cctcacctgc ttcttggtgg tgttcgtcgt atggttctat gtgggcacag ccaatccggc 2401 cgtgaagccg ggtctcactg cggagtttaa cttcttcgcc tggctgaaga gcgtcatatt 2461 ccggtgcttc ggcaaacgga tgaacgagta cgagcagata gtcgtgacac cctcgtgccc 2521 aggcgttgat ctctcaccca cgcagctcaa cgagcagaac gaggacttcc gtccgcggcc 2581 caactaccac cactcgtccg ttatcgaggg tcgcctcata gatgacatct agaccgagtc 2641 cagggtctag agcacaggtt cacctgtatg cgggccgggc aacggggcag gcggcgtggc 2701 tgtggaaagc aatagtcgag tgcatttctc taccgctaag cagtactacg tttaactaaa 2761 gtgaagtaga gccggcgagg cagccgaact aaacttaacc ctatgtgtgt ttgtaaatct 2821 gtacgaatgt atttgatgta tagttaggat agcgacagct gaggtcacga tggtagtatt 2881 ccaaactcgg tcttagttcg ttttgcttta acaaaatttg gagtctgtga cgcattttaa 2941 ctgggactct cccacgatgt agtgcttaga taagaaaatg ttgatagtgt attgattttt 3001 agctttttac tagttgttaa aacgttcgga ggtcagccaa atcagagcac atttcagttg 3061 cggaggctcc attctgacca cagctgtcca gtccagcgtt taccaccgtg tccatccccg 3121 tgtccacgcc tcgcccacac gcacacaccc aacttcagag gacactcaca caacaactca 3181 gagcactttc taattattaa ttctaatgta ttaattctta agcttcgcat tctttcgatg 3241 tgttccttgc tctcgtagtt cttcaacgat tactccttag ttgagagcga ataagttgtt 3301 gctaaatgga tatgtttcca gtgttccgca cacaaaacag aacgcatttc gaggagacat 3361 atgtgatact gagataataa gtgaaaccaa aaccagaaat caaactcgat gatttggcgc 3421 cttgcattta agacgacaac acacacagca cacagagcac aatgaaattg ttacagaaca 3481 caagaatgag ccacataaca caaacaacac ctaagctaag ctataatcct gtattaccat 3541 gtcggtggac aataacagtc ctaattgata atatatataa acctgtaccc gcgtacactc 3601 actcggcata cgatatcagc aat