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LOCUS NM_130548 2319 bp mRNA linear INV 26-DEC-2023 transcript variant A, mRNA. ACCESSION NM_130548 VERSION NM_130548.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2319) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2319) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2319) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2319) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2319) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2319) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2319) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2319) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2319) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2319) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2319) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2319) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2319) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2319) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2319) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2319) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2319) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2319) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2319) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2319) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2319) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2319) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2319) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 31, 2011 this sequence version replaced NM_130548.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2319 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2319 /gene="MTPAP" /locus_tag="Dmel_CG11418" /gene_synonym="CG11418; Dmel\CG11418; dmmtpap; DmMTPAP; DmNP_569904; EG:8D8.8; SD27341p; TUTase1" /note="mitochondrial poly(A) polymerase" /map="1F4-1F4" /db_xref="FLYBASE:FBgn0024360" /db_xref="GeneID:31081" CDS 112..1950 /gene="MTPAP" /locus_tag="Dmel_CG11418" /gene_synonym="CG11418; Dmel\CG11418; dmmtpap; DmMTPAP; DmNP_569904; EG:8D8.8; SD27341p; TUTase1" /EC_number="2.7.7.19" /note="CG11418 gene product from transcript CG11418-RA; CG11418-PA; MTPAP-PA; 3' terminal uridylyl transferase 1" /codon_start=1 /product="mitochondrial poly(A) polymerase, isoform A" /protein_id="NP_569904.1" /db_xref="FLYBASE:FBpp0070227" /db_xref="GeneID:31081" /db_xref="FLYBASE:FBgn0024360" /translation="MNSLVRRSAQQLSLWRTYCIKHNASEAASPGRNAGRPNYEEFIG RHQRQAQCSIVVQVSSEKSYEELYNYCSSFGSIMGAHHYCVRQDETLHYILLEYATSD EAAAAIGAGVTNGELSGVPVRSPFLWFRAAGGGRRSPKLVANTAPALLSLDGTRQVDQ RHLLGLLRGAADIEEQVQQLYEHTRLNELGIRMRFLAALQVQQAIAGMFPAAQAQPFG SSVNGFGRMGCDLDLILRFDSDMGAKIPLEAAVPSRLVYHTKENLSNGRSQTQRHMEC FGDMLHLFLPGVCHVRRILQARVPIIKYHHEHLDLEVDLSMSNLTGFYMSELLYMFGE MDPRVRPLTFTIRRWAQTCGLTNPSPGRWISNFSLTCLVMFFLQQLRQPILPTIGALA KAAEPGDSRVTEDGINCTFTRNVDRLGFRSRNQSSLSELLLQFFEFYSQFDFHNRAIS LNEGKPLSKPDHSAMYIVNPLEQLLNVSKNVSLEECERLRIEVRNAAWVLESEVENAS VPEGDGQELSCGLLNLFKHPEKAVIRPNMFFKPRMVEVSDLFEQKEAGATSSSTPPTP AITYKSASVRQQVQSIKAATRSELKQLRGSGSSVPTSSPNNRRRSR" misc_feature 688..1110 /gene="MTPAP" /locus_tag="Dmel_CG11418" /gene_synonym="CG11418; Dmel\CG11418; dmmtpap; DmMTPAP; DmNP_569904; EG:8D8.8; SD27341p; TUTase1" /note="Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases; Region: NT_PAP_TUTase; cd05402" /db_xref="CDD:143392" misc_feature order(760..768,796..801,805..807,1003..1008,1012..1014, 1018..1020,1051..1053,1072..1077,1084..1089) /gene="MTPAP" /locus_tag="Dmel_CG11418" /gene_synonym="CG11418; Dmel\CG11418; dmmtpap; DmMTPAP; DmNP_569904; EG:8D8.8; SD27341p; TUTase1" /note="active site" /db_xref="CDD:143392" misc_feature order(760..762,1003..1005,1012..1014,1018..1020, 1051..1053,1072..1077) /gene="MTPAP" /locus_tag="Dmel_CG11418" /gene_synonym="CG11418; Dmel\CG11418; dmmtpap; DmMTPAP; DmNP_569904; EG:8D8.8; SD27341p; TUTase1" /note="putative primer-binding pocket [active]" /db_xref="CDD:143392" misc_feature order(799..801,805..807,1051..1053) /gene="MTPAP" /locus_tag="Dmel_CG11418" /gene_synonym="CG11418; Dmel\CG11418; dmmtpap; DmMTPAP; DmNP_569904; EG:8D8.8; SD27341p; TUTase1" /note="metal binding triad [ion binding]; metal-binding site" /db_xref="CDD:143392" misc_feature 1390..>1494 /gene="MTPAP" /locus_tag="Dmel_CG11418" /gene_synonym="CG11418; Dmel\CG11418; dmmtpap; DmMTPAP; DmNP_569904; EG:8D8.8; SD27341p; TUTase1" /note="Cid1 family poly A polymerase; Region: PAP_assoc; pfam03828" /db_xref="CDD:427532" ORIGIN 1 ctcgacctaa cctcaaaaat acagcccaac aatattcggt taaattccag atccgaaatc 61 acccacacca agtgggccta ggacttgacc tgcccacacc ccaagcccgc catgaacagc 121 ttagtgcgac gcagcgccca gcagctgagc ctctggcgta catattgcat aaagcacaat 181 gcttcagagg cggcttctcc cggacggaac gcaggcaggc ccaactacga ggagttcatt 241 ggccgtcatc agcgacaggc ccagtgcagc attgtggtcc aggtgagctc cgaaaagtcg 301 tatgaggagt tgtataacta ctgcagcagc ttcggctcga tcatgggtgc ccaccactac 361 tgcgtgcggc aggacgagac cctgcactac atcctgctgg agtacgccac gtcggacgag 421 gcggcggctg ccatcggagc gggcgttacc aatggcgagc tgagcggcgt gcccgtgcga 481 tctccctttc tgtggttccg ggcagcggga ggaggcagac ggagccccaa gctagttgcc 541 aatacagcgc ccgcactgct atccttggac ggcacccggc aggtggatca gcgccaccta 601 ctggggctct tacgtggtgc agcggacatc gaagagcagg tgcagcagct gtacgagcac 661 acgcgcctga atgagctggg aatccgtatg cgctttctag ccgccctaca ggtgcagcag 721 gccattgccg gcatgtttcc cgccgcccag gcacagccct ttggctcgtc ggtcaacgga 781 tttgggcgaa tgggctgcga cctggacctc atcctgcgct ttgacagcga tatgggagct 841 aagatcccac tggaggcggc ggtgccctcg cgactcgtgt accacaccaa ggagaacctg 901 agcaacggac gctcgcagac gcaaaggcac atggaatgtt ttggagatat gctgcatctg 961 ttcctgcccg gcgtgtgcca tgtgagacgt attttgcagg cgagggtgcc catcatcaag 1021 taccaccatg agcatctgga cctggaggtg gacctctcca tgagtaacct cactggcttt 1081 tatatgtcgg aactgcttta catgttcggt gaaatggatc cgcgcgtacg gccgttgacc 1141 tttaccattc ggcgctgggc gcagacctgc ggcctcacga atccctcgcc tggtcgctgg 1201 atcagcaact tctcgctcac ctgcctggtc atgttcttcc tgcagcagct gcgccagccc 1261 atccttccca caattggagc gctggccaag gcggcggagc caggggactc gcgggtcacc 1321 gaggacggga tcaactgcac cttcacccgg aatgtggatc gtctgggctt caggagtcga 1381 aaccaaagct cgctgagcga gttgttgctg cagttcttcg agttctactc gcagttcgac 1441 ttccacaacc gtgcgatatc tttgaacgag ggaaagccgc tgtccaagcc ggatcactcg 1501 gccatgtaca tcgtaaaccc actggagcag ttgctaaatg tgagcaaaaa tgttagcctg 1561 gaggagtgtg aacgactgcg catcgaggtg cggaacgcgg cttgggttct ggagtcggag 1621 gtggagaatg cctccgttcc ggagggcgac ggccaggagc tctcctgcgg cctgttgaac 1681 ctgtttaagc atcccgaaaa ggccgtcatc cggccgaaca tgttcttcaa gccgcgcatg 1741 gtcgaagtga gcgatctctt cgaacagaag gaggcgggag caacgtccag ctcaactcct 1801 cccacaccag ccataaccta caagagtgcc tctgtgcggc agcaggtgca gagcatcaag 1861 gctgctacgc gctccgaact aaagcagctg cgcggatcag gcagctcagt tccgacgagc 1921 agtcccaata atcgacggcg aagcaggtga tgtttccgag actgacaccg cccatgtaca 1981 tacatactta ggataagcca caacttcaca ttcatggtga gtccagctta aggttagggc 2041 agccgccgtt ggctgaattg aatgttgttc atactttaaa acctcctgct agttaggata 2101 agtccatgat cgatccgact ttgagtattg aaaccgattg ttgttgacga atgcgaccaa 2161 gtgtggcagg gcagggaaag atcggtgggg cacgtcaaaa agagccgaag gaagcagtca 2221 ttatttgact ttgtggatga gtagttatcc gtaagacata ctttcctagt tcgagtagtt 2281 ataattctgt tttttatgat aataaaacga aaataccgt