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LOCUS NM_130542 2890 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_130542 VERSION NM_130542.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2890) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2890) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2890) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2890) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2890) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2890) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2890) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2890) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2890) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2890) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2890) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2890) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2890) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2890) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2890) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2890) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2890) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2890) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2890) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2890) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2890) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2890) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2890) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_130542.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2890 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2890 /gene="CG11403" /locus_tag="Dmel_CG11403" /gene_synonym="cg11403; Chl1; Dmel\CG11403; EG:33C11.2" /map="1E5-1E5" /db_xref="FLYBASE:FBgn0026876" /db_xref="GeneID:31072" CDS 103..2688 /gene="CG11403" /locus_tag="Dmel_CG11403" /gene_synonym="cg11403; Chl1; Dmel\CG11403; EG:33C11.2" /EC_number="3.6.1.-" /note="CG11403 gene product from transcript CG11403-RA; CG11403-PA; DNA helicase" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_569898.1" /db_xref="FLYBASE:FBpp0070235" /db_xref="GeneID:31072" /db_xref="FLYBASE:FBgn0026876" /translation="MSQYTPNQRLDTPGAQEFGFPYSPYEIQEQLMQELFQVLERGQV GIFESPTGTGKSLTLTCGALTWLARHEELVRTEMLARIRGVEQELAKLKEESEQSSNW LESQGKSRAQRAELLRLQHLQALLDKQEQQLDQIRKGAKKHKRQGRVHPGKLEELEKD LDPESDSDSEHETADGPQEAAEDRYRPVQIFFCSRTHSQLAQIVAELRKTPHGQSVRS ISLGSRQQLCGNPAVRKLKHVGLMNERCLDMATKKARPNPSKKSRLTAEANSRCPFKA ASLVESLRDLALTEPLDIEELANEGTACGGCSYYASRSAVEHAQLILLPYQLLLQKSA RNQLGISLKGSIVIVDEAHNLLDSVAQLHGSEISRQQLERAKVQISGYKDHFQKRFTT KNLLKINQIIFIIRRLLKILDQRKELQSNGCSMMRTYELTAEGDFFNIDLCELLDFCA RTRFARKVQGRADRMEREPRPSENQAPVSTARSLILQRLASEQKLKEKTKSVKRRVED INKEDKAEELQEQQKPTKKPVEEVAPSPIRPLLAFLETLTSNAEDGRILVDPVGGTLK YILLDPAEQFADIVAEARAIVIAGGTMQPTKELKEQLFTGCHDRLVERFYNHVVANDA ILPFVISNGPSGAPLSFKFAHRGSAEMLRELSMILRNLCQVVPGGVVCFLPSYEYLDK VYKYLEQSGTLETISGRKSVFREVSGSAEQLLDNYALAIKRPASYGALLLSVVGGKLS EGLNFADDLGRAVLVVGLPYSNSLSPELRQRMQHLDEKLGPGAGNEYYENLCVKAVNQ CIGRAVRHIKDYACVYLLDKRFADPKIRGKLPKWISRHIVEANAANGGFGAVQGRTAR FFKGR" misc_feature 226..>405 /gene="CG11403" /locus_tag="Dmel_CG11403" /gene_synonym="cg11403; Chl1; Dmel\CG11403; EG:33C11.2" /note="N-terminal helicase domain of the DEAD-box helicase superfamily; Region: DEAD-like_helicase_N; cl28899" /db_xref="CDD:475120" misc_feature 253..273 /gene="CG11403" /locus_tag="Dmel_CG11403" /gene_synonym="cg11403; Chl1; Dmel\CG11403; EG:33C11.2" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:350670" misc_feature 661..2613 /gene="CG11403" /locus_tag="Dmel_CG11403" /gene_synonym="cg11403; Chl1; Dmel\CG11403; EG:33C11.2" /note="DNA repair helicase (rad3); Region: rad3; TIGR00604" /db_xref="CDD:273169" ORIGIN 1 tttgttcttc ttcttcttgg cgcgtcgttt tgtcttggca ttttgcaatt tctgcctctt 61 ttgacgcaaa aatgtaaaat aaggatataa aacatctcga aaatgtccca gtacacgccc 121 aaccagcggc tggacacgcc cggcgcccag gagttcggat tcccgtactc accgtacgaa 181 atccaggagc agctgatgca ggagctcttc caagtgctcg agagaggtca ggtgggcata 241 ttcgagagtc caacgggaac ggggaagtcc ctcaccctca cctgcggcgc cctcacctgg 301 ctggctaggc acgaggagct ggtgcgcacg gaaatgctgg ccaggattcg cggagtagaa 361 caggagttgg ctaaactcaa ggaggagagc gagcagtcca gtaactggct ggagagccag 421 ggaaagtcca gagcacagcg ggcggagctc cttagattgc agcacctgca ggctttgctg 481 gacaaacaag agcagcagct ggatcagatc aggaaagggg ctaaaaagca taagcggcaa 541 ggaagggtgc acccaggcaa gcttgaggaa ctggagaagg acctggatcc tgaatccgac 601 tcggattcag aacacgaaac cgccgatgga ccgcaggaag cagccgaaga ccgctatcgc 661 cctgtgcaaa tcttcttttg cagccgcacc cattcgcagt tggcacaaat tgtggccgaa 721 ctgcggaaaa cacctcatgg ccagtcggta aggtccattt ccctgggctc gcggcagcag 781 ctgtgcggga atcccgcagt ccggaagctg aagcatgtcg gcctgatgaa cgagcggtgc 841 ctggatatgg ctaccaagaa agcacgcccc aatcccagca aaaaaagtcg gctaactgca 901 gaggccaaca gtagatgccc gtttaaagcg gcttccctgg tggaatccct cagggatttg 961 gctttgaccg aaccgctgga catcgaggag ctggccaatg aggggaccgc ctgcggtggc 1021 tgctcgtatt acgcctcaag atccgctgtg gagcacgctc aacttatact actgccgtat 1081 caactgctgc tccagaagtc cgcccgtaac cagctgggta taagtcttaa ggggtcaatc 1141 gtcatagtag atgaggctca caacctactg gacagcgtgg cccagctgca cggctccgaa 1201 atcagccgtc agcagttgga gcgggccaag gtgcagatct ccggctataa ggaccacttc 1261 caaaagcgtt tcaccaccaa gaatctcctg aaaatcaacc aaatcatctt cataattcgc 1321 cgattgctta agattctaga tcagcgcaag gaattgcagt ccaacggctg cagcatgatg 1381 cgcacctatg agctaaccgc cgagggtgac ttcttcaaca tcgatctgtg cgagcttctg 1441 gacttttgcg ctcgcactcg tttcgcgagg aaagtacagg gacgtgcaga cagaatggag 1501 cgggaaccac ggccgagtga gaatcaagct cctgtgtcaa cggcgaggag tctgatcctc 1561 caaagattgg caagcgagca aaagctgaaa gagaaaacca agtcggtcaa aagaagagtg 1621 gaagacatca ataaggaaga taaagcggag gagttgcaag aacagcagaa gccaacgaag 1681 aagccggtcg aggaagtagc tccttcgcca atcagaccat tgctggcatt tctggaaacc 1741 ctcaccagca atgctgagga tggcagaatt ttggtggatc ccgtgggggg aaccttgaag 1801 tacatactcc tcgaccccgc cgagcaattc gccgacatcg ttgcagaagc cagagcgatt 1861 gtgatcgctg gcggaaccat gcagcccact aaggagctga aggagcagct atttaccggt 1921 tgccatgatc gtttggtcga gcgtttctac aaccacgtgg tggcgaatga cgcgatcttg 1981 ccctttgtga tatccaatgg ccccagcggt gctccgctgt cttttaagtt tgctcataga 2041 ggcagtgcag aaatgctccg ggagctctca atgattcttc ggaatctgtg ccaagtggtg 2101 ccgggcggag tagtttgctt cctgccgtcc tacgagtatt tagacaaggt ctacaagtac 2161 ctggagcagt ccggcaccct cgagacgatt agcggcagga aaagcgtgtt tcgtgaggtc 2221 tccggatcgg ccgagcagct cctggacaac tatgcgctgg ccattaagag acctgcttcg 2281 tatggagccc tcctcctgag tgtcgtggga ggaaagctct ccgaaggcct gaacttcgct 2341 gacgatctgg gcagagcagt gctcgtagtg ggcctgccgt attccaacag cctgtcgccg 2401 gagctgcgcc agcgaatgca gcacctggac gagaaactgg gaccgggcgc aggcaacgaa 2461 tactacgaga atctctgcgt aaaggctgtc aaccagtgca taggacgggc agtgcgccac 2521 atcaaggact atgcctgcgt atatctgctg gataagcgtt ttgcggatcc gaagatacgc 2581 ggcaaactgc cgaagtggat ttcccgccac atcgtggagg cgaacgccgc gaatggaggc 2641 tttggagccg tgcaaggacg cacggctagg ttcttcaagg gcagatgagc cttgggtaca 2701 ccttcttcca taaagatctt aattgtattt tagctttaat tcttagctat agtatcaata 2761 tactagattg taattgtatt ttagctttaa ttcttagcta tagtatagta tattgaagtc 2821 tttatttttt cttataaaaa tagcatttgt aggccattgt aaatggttaa ataaagtgca 2881 tagcaatttt