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LOCUS NM_130535 2704 bp mRNA linear INV 26-DEC-2023 A (CG11380), mRNA. ACCESSION NM_130535 VERSION NM_130535.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2704) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2704) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2704) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2704) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2704) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2704) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2704) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2704) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2704) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2704) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2704) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2704) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2704) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2704) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2704) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2704) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2704) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2704) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2704) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2704) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2704) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2704) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2704) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_130535.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2704 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2704 /gene="CG11380" /locus_tag="Dmel_CG11380" /gene_synonym="Dmel\CG11380; EG:BACR42I17.7" /map="1E4-1E4" /db_xref="FLYBASE:FBgn0040359" /db_xref="GeneID:31065" CDS 289..1998 /gene="CG11380" /locus_tag="Dmel_CG11380" /gene_synonym="Dmel\CG11380; EG:BACR42I17.7" /note="CG11380 gene product from transcript CG11380-RA; CG11380-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_569891.1" /db_xref="FLYBASE:FBpp0070194" /db_xref="GeneID:31065" /db_xref="FLYBASE:FBgn0040359" /translation="MRLALILGTLSAIVCLASSLSQSEASGSKGNGFPKKVTTLKKRP TKTPTTVPISISRATTLKPSKPRVKIGTSATTKSPTKAPALTETFGNLPADDLEFIKE LDKQFKLHGNKIKIKVERDNSTSSGGKNSKRTIEGDLGYGYSHPGYDYTPPKFMFYPY SQHDIPSGFALPQPHPEEQEEEAHQPAMQHHHNHEQVTSVTIEPSYSYELKPQTSYET QPQHTAPEQPQIDLPQDEAESPSGAGGSSGHGGYQEPVIVLRIPGPAKYAAHLQTLLQ QYLEIRAAQYLSLLQEADQQQQQQQHQHVDPSQQYGPPEPATYHQEVSYAHQLAPTPA PVQYAPIDDVYQSYKGRHQQQLQLQQQQYEPQQYYAPMDYQQPTQFYYAQPQSHLQQQ PQLYLIAMAQPETEPEPQPQQHHHQQHHHHLQQQQQQQQPIYVPESDPPTGPSGGPEQ EPEADHSLPITENNPRPTHTKVIFNPYPYQQQQHQPQQQTTNIEEHQHQPEGERPFNY HAHAIKMRQGKRAAKPEPADGDVGPSSGDKGLQQIREYVREKLGAEMGSAVEYKTTQL LEG" ORIGIN 1 atccgcagta agaggcgcga cttttgaacg ctagcaccgc tccgattccg attccgacta 61 cgaatctgag acgaaaatca aaaccaaatt cgtatagaca ctataaccaa cataacttaa 121 acccaccagc ccggccgtgt acccttggta ttttttgttt ttgtggttct cgaagacaca 181 aatgtattga aaagtgcata tattattaca tataacatat aacgtcaata tcaaattcgg 241 attttgtgaa aaagtcgctg tgcatgcgca ttgatacctg gaatcgccat gagattagcg 301 ttaatattgg gcactcttag tgctatagtg tgcttggcca gcagcttgag ccagtcagag 361 gcgagtggct caaagggcaa tggatttccc aaaaaggtta ccaccctgaa gaagcgacca 421 acaaaaacgc cgaccacagt tccgatttcc atcagcagag caaccacttt gaagcccagt 481 aagccacgcg tgaagatcgg cacatcggca accaccaaga gccccacgaa agcaccggcc 541 ttaaccgaga catttggcaa tctgccggcg gatgacctgg aattcattaa ggagctggac 601 aagcagttca aactgcacgg aaacaagatc aagatcaagg tggagaggga taattccacg 661 agtagcggcg gcaagaacag caagaggacc atcgaggggg atttgggata cggctactcg 721 catcctggct atgattacac gccgcccaag ttcatgttct atccatactc acagcatgat 781 attccctcgg gctttgccct tccacagcca catccggagg agcaggagga ggaggcacac 841 cagccggcaa tgcaacatca tcacaatcac gagcaagtga ccagcgtgac cattgagccc 901 tcgtactcct acgagcttaa gccccagacc agctatgaaa cccaaccgca gcacacagct 961 cccgagcagc cgcagattga tctgccccag gatgaagcgg aaagtcccag tggtgcaggt 1021 ggttccagtg gccacggggg atatcaggag cccgtcattg tcttgcgtat tccaggaccc 1081 gccaagtacg ccgcccattt gcagaccctt ctccagcaat atctggagat cagagcggcc 1141 cagtacctca gcttgctcca ggaggccgat cagcagcaac aacaacagca gcatcagcat 1201 gtggatcctt cgcagcaata tggaccacca gaaccggcca cctaccatca ggaagtcagc 1261 tacgcccacc aactggcacc cacgccggca cccgtccagt acgcacccat cgatgatgtc 1321 taccagagct acaagggtcg ccaccagcaa cagctgcagc tgcagcagca acaatatgag 1381 ccgcaacaat actacgcgcc catggactac cagcagccca cacagttcta ctacgctcag 1441 ccccaatccc atttgcagca gcagcctcag ctctatctga tagcaatggc ccagccggaa 1501 acggaaccgg agccgcaacc acagcagcac catcatcagc agcaccatca tcatcttcag 1561 cagcagcagc agcagcagca accaatatac gttccagaat ctgatccacc gacgggtcct 1621 tcaggtggtc ctgaacagga accggaggcg gaccacagcc ttcccataac ggaaaacaac 1681 ccacgaccca cccacaccaa ggtcattttt aatccgtacc cctaccagca gcagcagcat 1741 caaccgcaac agcagaccac caacatcgag gagcaccagc accagcctga gggcgaacgc 1801 cccttcaact accacgccca tgcgatcaag atgcgccagg gcaaaagggc ggccaagccg 1861 gaacccgcgg atggggacgt gggtcccagt tcgggcgaca agggactcca acagatcagg 1921 gagtatgtga gggagaaact gggcgctgaa atgggttcgg ctgtcgaata caagacgaca 1981 cagctgctcg agggctgagg tctggataaa tgttcagatg ttcgaaggca tggaaactca 2041 tttgaccgaa cgcactatct ctgcctggat gaactaaacc aatttttaaa cttggcaatc 2101 ttcaaacgat tttatcaaag gttttttcgg atgccttaga attctagaat taaattttaa 2161 atcgcttacg cacgttttct atgtatatat ccaggcaagc catctttaaa acaaattcaa 2221 acatccgtac attatgaata tggggatcaa gtccagcaag acagtaaaat tccagtgagt 2281 gccatgccca cgttcactcg tattcttaac acacaatttg tggttgcttc ttgtgcctga 2341 tatccgctca ttagtattta ttccaagcta gaggagcaga acgatcccgg ggtgatcctc 2401 cagctccaaa tctcatccaa cacctacccg caatccctga gctacacagc caaggcatac 2461 ttttggccgg aaaagagggc gcctaaagat aggcatagtt ttcttttctt agcgaagagg 2521 tgctgccggg acacattcgc ttttcattat tttgtacgac gttttttttt atgttgttta 2581 tattgttaac caagaaaatg tgctgctgat catgtgtgca atatttagtc ttaatgtgct 2641 tcttgattta cctatattat gtacttgtat ttttgtatga ttaaaccgaa aagaaattaa 2701 tttg