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LOCUS NM_130517 2155 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_130517 VERSION NM_130517.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2155) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2155) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2155) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2155) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2155) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2155) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2155) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2155) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2155) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2155) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2155) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2155) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2155) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2155) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2155) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2155) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2155) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2155) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2155) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2155) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2155) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2155) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2155) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_130517.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2155 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2155 /gene="mus81" /locus_tag="Dmel_CG3026" /gene_synonym="CG3026; Dmel\CG3026; EG:BACR7A4.16; Mus81" /map="1D2-1D2" /db_xref="FLYBASE:FBgn0040347" /db_xref="GeneID:31044" CDS 120..1400 /gene="mus81" /locus_tag="Dmel_CG3026" /gene_synonym="CG3026; Dmel\CG3026; EG:BACR7A4.16; Mus81" /note="CG3026 gene product from transcript CG3026-RA; CG3026-PA; mus81-PA" /codon_start=1 /product="mus81" /protein_id="NP_569873.1" /db_xref="FLYBASE:FBpp0070165" /db_xref="GeneID:31044" /db_xref="FLYBASE:FBgn0040347" /translation="METRLEVLLREPNPLFTRWLERWLREAERREQKSQFSLRQALES LKSYPLPLASGRDCSILRGFGGTLCQLIDEELRHHRGLQLLPQEAVVQERYEQQVQAV VRKVQEKQLEHQKRQNKCDRPRKLTKKDLAELAALEERERVVRMKPGQFQLLLLVDTQ ETSGKNKRVLDQTRSYLESLGARHEVRRLTIGDFLWVAQDQEGNELVLPYIVERKRMD DLASSIRDGRFHEQKHRLQHCGLQHIIYLVEDYGDNEQLGLPLDSLQQALTNAKVQTG VRVVRTANHYRSMSYLAGMSRTLGQIFAGKKLHSVDRGAIDQSTCLLTHSDLGLLKFR ALYEDSAKNAQLTVREVFVQQLLQLHSLSLERAMAIVERYPTPRWLLDAYAECADQKQ ARLLLASIPCGPLERPLGDKISQCLHEFYSTHFR" misc_feature 165..>407 /gene="mus81" /locus_tag="Dmel_CG3026" /gene_synonym="CG3026; Dmel\CG3026; EG:BACR7A4.16; Mus81" /note="Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins; Region: NT_Pol-beta-like; cl11966" /db_xref="CDD:472251" misc_feature 567..1016 /gene="mus81" /locus_tag="Dmel_CG3026" /gene_synonym="CG3026; Dmel\CG3026; EG:BACR7A4.16; Mus81" /note="XPF-like nuclease domain of Mus81; Region: XPF_nuclease_Mus81; cd20074" /db_xref="CDD:410850" misc_feature order(591..593,600..602,696..698) /gene="mus81" /locus_tag="Dmel_CG3026" /gene_synonym="CG3026; Dmel\CG3026; EG:BACR7A4.16; Mus81" /note="Mg binding site [ion binding]; other site" /db_xref="CDD:410850" misc_feature order(747..749,798..800,807..812,819..821,846..848, 852..854,912..917,924..929,933..938,948..962,966..968, 978..980,990..992,999..1004,1011..1016) /gene="mus81" /locus_tag="Dmel_CG3026" /gene_synonym="CG3026; Dmel\CG3026; EG:BACR7A4.16; Mus81" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:410850" misc_feature order(789..794,807..809,906..908,915..920,927..929) /gene="mus81" /locus_tag="Dmel_CG3026" /gene_synonym="CG3026; Dmel\CG3026; EG:BACR7A4.16; Mus81" /note="nucleic acid substrate binding site [nucleotide binding]; other site" /db_xref="CDD:410850" ORIGIN 1 aaactagttg tacagtaata aaaatgccac caccagaagc cggcaattga agcgcgttta 61 tttgccgtgc attagtttta ttatttggca ttgttttaca taataaaagt tgtgaagcaa 121 tggagacccg actggaagtg ctcttgcggg agccgaatcc attgttcacc cgttggctgg 181 agcgctggct gcgcgaagcg gagcgccgag aacagaagtc ccagtttagc ctgcgccagg 241 cgttggagtc cctaaaaagc taccctctgc cattggccag cggacgagac tgttccattc 301 tgcgcggctt tgggggcacc ctctgccagc taatcgacga ggaacttcgc catcacagag 361 gcctccaatt gctgccacag gaggccgtgg ttcaggagcg ctacgagcag caggtccagg 421 cggtagtacg caaggttcag gagaagcagc tggaacacca gaaacgccag aataaatgcg 481 acaggcccag gaagctaacc aaaaaagatc tggcggagct ggcagccctt gaagagcggg 541 agcgcgtcgt gcgaatgaaa ccaggtcaat tccagttact ccttttggtg gatactcagg 601 aaaccagtgg caaaaacaag agagttctgg accagacgag gagctacttg gagtccttgg 661 gagcccgtca tgaagtgcgt cgcctgacaa tcggcgattt cctttgggtg gcccaggatc 721 aagagggcaa tgaactggtt ttaccctaca ttgtggagcg caagaggatg gacgacctgg 781 catcgagtat tcgggatggt cgcttccacg aacagaagca caggctgcag cactgcggcc 841 tgcagcacat catctacctg gtcgaggact atggcgataa cgagcagctg ggccttccac 901 tggactcctt gcagcaggct ctgactaatg ccaaagttca aactggtgtc cgagtggtgc 961 gcacggcgaa tcattaccga tccatgagct atttggccgg aatgagtcgc acccttggcc 1021 agatattcgc cggcaagaag ttgcacagcg tggatcgcgg cgccatcgac caatccacct 1081 gcctgctcac gcattccgac ctggggttgc tcaagtttcg ggccctatat gaggattccg 1141 caaagaatgc ccagctcaca gtgcgcgagg ttttcgtgca acagttgcta cagctgcatt 1201 ccctttccct cgaacgcgcc atggctattg tggaaagata ccccactcca cgctggctgc 1261 tggacgcata cgcggagtgt gcagaccaaa agcaggccag gctactcctc gccagcatcc 1321 cgtgtggacc cctggaacgt ccactgggcg acaagatcag ccagtgccta cacgaattct 1381 acagcacgca ctttcgttag gattagcaat tgattttatg ggacatatct aaggttatat 1441 acacgagttt atacataagt gagagagaga atacgttgga cattgaatag tgtgatctag 1501 tctaagccaa aaaatgtaca agtcagccgc ccttagatgt tgcggaagtg ccggatggcc 1561 aggtccaccg gcaggtcgaa gtcaaatcga gaaagagcat cgatggagcg cagtgagtcg 1621 cggaatccgg tgcgggccac gtagctgtct gctgagtagt acgtgtccac cagttcatgg 1681 cagctgagga tcaggttcag ccactccacc agcaaatggg aactgtttga aggaagagaa 1741 aagcatttcg aatgaaagaa gtgtgataaa agccaaggta aaggtctatc cccgcgtccc 1801 tgttagcctt atgcttaaat taattcggca gactgcaaag tcaaaagcta cctgcaccta 1861 gctaaatata ttaatattta catatttata tttacatgtt aaagcaaaaa atcgattaag 1921 caattcattg ataaaaaagt ttaagacagt agagaattga cattaccgca gaattgctga 1981 taattgcagt aagaatattt tgattttgga cacttgtaat tataaaaagt ttgtgtgtct 2041 cttgctcttt aagattcctc tttgccagga aaataactat aaaatgaaga tttgaagatg 2101 taaaaggcta gtgcttcaaa ctatgcacct gtaaataata tggtattgca aagtt