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LOCUS NM_130507 1743 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_130507 VERSION NM_130507.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1743) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1743) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1743) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1743) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1743) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1743) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1743) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1743) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1743) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1743) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1743) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1743) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1743) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1743) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1743) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1743) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1743) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1743) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1743) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1743) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1743) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1743) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1743) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_130507.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1743 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1743 /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="Secretory 22" /map="1C5-1C5" /db_xref="FLYBASE:FBgn0260855" /db_xref="GeneID:31030" CDS 410..1045 /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="CG7359 gene product from transcript CG7359-RA; CG7359-PA; Sec22-PA; Sec22 ortholog" /codon_start=1 /product="secretory 22, isoform A" /protein_id="NP_569863.1" /db_xref="FLYBASE:FBpp0070136" /db_xref="GeneID:31030" /db_xref="FLYBASE:FBgn0260855" /translation="MALLTMIARVIDGLPLVGTMQDDEQSGRSILDYQNQAKMLFRKL GTHSPARCSIETGPYLFHYLIENDVCYLVMVDKMYSKRLAFNYLEDLAQEFHANYGRR VNSVTRPYAFIEFDVYIQKAKKQLTDRRRNISNINTQLQDVQRIMVQNIDDVLQRGTV LAELDTKTQNLSMMSQKYKKDAKLLNRKSMYVKAMALGMILLVFIMYFWVL" misc_feature 416..784 /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="longin domain; Region: Longin; cd14824" /db_xref="CDD:341428" misc_feature order(416..418,506..508,515..517,575..577,584..586, 590..592) /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="lipid binding site [chemical binding]; lipid-binding site" /db_xref="CDD:341428" misc_feature order(452..454,461..463,467..469,509..511,521..523, 758..760,770..772,779..781) /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="Sec22 interface [polypeptide binding]; other site" /db_xref="CDD:341428" misc_feature order(572..574,581..583,641..643,653..655) /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="VARP interface [polypeptide binding]; other site" /db_xref="CDD:341428" misc_feature 797..988 /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="SNARE motif of SEC22; Region: R-SNARE_SEC22; cd15866" /db_xref="CDD:277219" misc_feature order(803..811,815..820,824..841,845..853,857..859, 866..871,875..883,887..904,908..925,929..946,950..967, 971..979) /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="heterotetramer interface [polypeptide binding]; other site" /db_xref="CDD:277219" misc_feature 878..880 /gene="Sec22" /locus_tag="Dmel_CG7359" /gene_synonym="34F3.8; CG7359; Dmel\CG7359; EG:34F3.8; sec22; SEC22; Sec22p" /note="zero layer; other site" /db_xref="CDD:277219" ORIGIN 1 cggtatattt acacggacat accggtgacg tggttacatt gcaacaaaca tccacagaaa 61 cctccaatcc actccaatcc cagacacccg cccgccgcga cgttgcaaca cagttttcat 121 ggtagcagcg aacgttcccg attcgaggca gagtccattt ggaagtcccg ggcatcgcag 181 gagcactgcg gcaagcaccg accgatcggc tgagttgtga aatccaagaa gtggaagagg 241 acgaccggac acaaacttca cacactggtg actggactgc agcggatcca catcggaata 301 agtagcagcc agtggaagga ggcgacggca gagtgcagcc gtggccaaga agacttgaga 361 cgcagccccg tagttccgcg agcaatcgta accaggaaca gcagaagcca tggcgctgct 421 gaccatgata gccagggtca tcgatggcct tcctctggtg gggaccatgc aggatgacga 481 gcagagcgga cgcagcatac tggactacca aaaccaggct aagatgctct tccgcaagct 541 gggtacccac tccccggctc gatgcagtat cgagaccgga ccctacctat tccactacct 601 aatcgagaac gacgtctgct acctggtgat ggtggacaag atgtactcaa agcgactggc 661 cttcaattac ctggaggacc tggcccagga gttccatgct aactacggcc ggcgagtaaa 721 ctcagtgact cgcccatacg cattcatcga gtttgacgtg tacatacaga aggcgaaaaa 781 acagttgacg gaccgcagac gcaacatcag caacatcaac acacagctgc aggatgtgca 841 gcgcatcatg gtgcaaaaca ttgacgacgt gctccaacgt ggcacagtgc tggcggaact 901 cgacaccaag acccagaacc tatcgatgat gtcacagaag tacaagaagg acgccaagct 961 gctcaaccga aagtccatgt acgtgaaggc gatggccttg ggcatgatac ttctagtgtt 1021 catcatgtat ttctgggttc tgtaatatca agcagttcca tggccactcg gagcggcgcg 1081 ttctttgttg gagtcaagcg tcaaggacgc aagaccaaaa gacatttaga ttacgcgtgc 1141 acctgtactc cacgccacca accacaccat attcattcat atctatgaat cataggcaag 1201 cgaaaagtga atagcgaaac cccctaccag catacgcatc gctcccgagg attgttttac 1261 ttctaatatt aacttacctt tgcgttattt acggtctggg attccattaa ttattaactc 1321 ccatttcatt tcgcctcgcg cttccgttgc gcaggttttc taaatatttg attacgaatc 1381 gggtttagtt tagacgacct ttgagccaag tcggttgact acgacccaaa tctgtaaatt 1441 atgagcgtcg atccgtgtgt gtgtgtataa atgtctagat tgtagatgga tcgctgcata 1501 gcgaatccga atccggcgga gtgcttgata caagctgcaa aaacaccgca aaaaacaaaa 1561 gaaaaagaaa agataacaag cgaaccgaaa gaaaagaaaa gaagagaaag ggaaataaac 1621 aataacagtt ttaggcaatt tatatgtgta aaattaaggc aaataaataa atttatattg 1681 tttaataaag agaaggcaaa actgtgttcg atgcactacc caagcccgaa agatagaaac 1741 tgc