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LOCUS NM_130502 2671 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_130502 VERSION NM_130502.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2671) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2671) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2671) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2671) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2671) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2671) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2671) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2671) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2671) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2671) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2671) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2671) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2671) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2671) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2671) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2671) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2671) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2671) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2671) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2671) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2671) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2671) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2671) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_130502.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2671 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2671 /gene="tw" /locus_tag="Dmel_CG12311" /gene_synonym="CG12311; Dmel\CG12311; DmPOMT2; dPomt2; dPOMT2; DPOMT2; EG:34F3.7; POMT-2; Pomt2; POMT2; Tw" /note="twisted" /map="1C4-1C4" /db_xref="FLYBASE:FBgn0086368" /db_xref="GeneID:31024" CDS 160..2457 /gene="tw" /locus_tag="Dmel_CG12311" /gene_synonym="CG12311; Dmel\CG12311; DmPOMT2; dPomt2; dPOMT2; DPOMT2; EG:34F3.7; POMT-2; Pomt2; POMT2; Tw" /note="CG12311 gene product from transcript CG12311-RA; CG12311-PA; tw-PA; protein O-mannosyltransferase 2; tricky-dickey; twist; twisted; twisted abdomen" /codon_start=1 /product="twisted, isoform A" /protein_id="NP_569858.1" /db_xref="FLYBASE:FBpp0070134" /db_xref="GeneID:31024" /db_xref="FLYBASE:FBgn0086368" /translation="MAASVVKTPKCPRRGSVKDVAQNAPRTAPTSSKEANWNWWLLLA TVFLVTFATRFYKVTEPDHICWDETHFGKMGSWYINRTFFFDVHPPLGKMLIGLSGYL TGYNGTFPFEKPGDKYNETRYQGMRYFCTTLGALIMPMGFDTVYDLTRSHEAALLAAA YLIFDVGLLTLNQYILLDPILLFFMMASVWGMVKVSKSTASGGSYGLRWWLWLFLTGT MLSCTISVKFVGLFVVLLVGLHTATELWLILGDLGQPILETVKQLACRAITLIVWPVL LYILFFYIHLSVLNRSGNGDGFYSSAFQSRLIGNSLYNASMPRDVAYGSLVTIKNHKT GGGYLHSHHHLYPKGSGARQQQVTTYTHKDENNKWLIRPHNKPGPPKGKVQILRHGDL VRLTHMATRRNLHSHNEPAPMTKKHLQVTGYGELGLGDANDVWRVLIVGGKVNETVHT VTSRLKFIHLLQNCALTSSGKQLPKWGFEQQEVSCNPNVRDKNSQWNVEDNEHKLMPS VSFSVYAPGFFARFLESHAVMLQGNAGLKPKEGEVTSRPWQWPINYRGQFFSGSSYRI YLLGNPLIWWSNLVFLALFVTVFLCNAVVQQRRAGFARSAAQNQAQVPDSETVAQDEE SEHSTTDICSCCTPAKEIVPKAVPSGSPEAPNPAQSLRAAAWLFLGWMLHYLPFWAMG RVLYFHHYFPALIFNSLLTGVMYNYILRVLPKWIHHVILGLVLSILVYSFAAFSPLAY GMSGPLANEPNSTMYNLKWLSTWEF" misc_feature 289..1029 /gene="tw" /locus_tag="Dmel_CG12311" /gene_synonym="CG12311; Dmel\CG12311; DmPOMT2; dPomt2; dPOMT2; DPOMT2; EG:34F3.7; POMT-2; Pomt2; POMT2; Tw" /note="Dolichyl-phosphate-mannose-protein mannosyltransferase; Region: PMT; pfam02366" /db_xref="CDD:396786" misc_feature 1120..1668 /gene="tw" /locus_tag="Dmel_CG12311" /gene_synonym="CG12311; Dmel\CG12311; DmPOMT2; dPomt2; dPOMT2; DPOMT2; EG:34F3.7; POMT-2; Pomt2; POMT2; Tw" /note="MIR domain, beta-trefoil fold, found in protein O-mannosyl-transferase 2 (POMT2) and similar proteins; Region: beta-trefoil_MIR_POMT2; cd23282" /db_xref="CDD:467753" misc_feature order(1405..1407,1558..1560,1564..1566,1621..1623, 1636..1638) /gene="tw" /locus_tag="Dmel_CG12311" /gene_synonym="CG12311; Dmel\CG12311; DmPOMT2; dPomt2; dPOMT2; DPOMT2; EG:34F3.7; POMT-2; Pomt2; POMT2; Tw" /note="putative heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:467753" misc_feature 1717..2442 /gene="tw" /locus_tag="Dmel_CG12311" /gene_synonym="CG12311; Dmel\CG12311; DmPOMT2; dPomt2; dPOMT2; DPOMT2; EG:34F3.7; POMT-2; Pomt2; POMT2; Tw" /note="C-terminal four TMM region of protein-O-mannosyltransferase; Region: PMT_4TMC; pfam16192" /db_xref="CDD:465056" ORIGIN 1 ccaaagccaa gttgcagacc tgcagaccgg ttttggccaa gaaagaagaa cgaagaaaga 61 tcgagtcggt cgaccaaaga gaaagcatga tcggttggtt gttgttgacg tgtgcaccac 121 tctaagaagt gtttcaattt aaacggccaa aactatataa tggcagcaag tgttgttaaa 181 acccccaagt gccccagacg aggatctgtc aaagatgtgg cccaaaacgc acctagaaca 241 gcacccacat ctagcaaaga ggccaattgg aactggtggc ttctcctggc taccgtcttc 301 ctggtgacct tcgccacccg cttctataag gtcaccgagc cggatcacat atgttgggat 361 gagacgcact ttggcaagat gggcagttgg tacattaaca gaaccttttt tttcgatgtc 421 catccaccgc taggaaagat gctcattggc ctctctggct acttgacggg ctacaatgga 481 acgtttccgt ttgagaagcc aggtgacaag tacaacgaga cgcggtacca gggcatgcga 541 tatttctgca ccacactggg agctctgatc atgcccatgg gattcgatac tgtctacgat 601 ttgacccgtt cccatgaagc tgccttgctt gcggctgcct atcttatttt cgatgtgggg 661 ctcttgaccc tgaaccagta catcctgctg gaccccattc tgttattctt catgatggcc 721 tccgtctggg gcatggtcaa ggtatcgaag tccacggcct ccggaggatc gtacggtcta 781 cgctggtggc tctggctctt cctcaccggc accatgttgt cctgcacgat tagcgttaag 841 ttcgtgggtc tgtttgtggt gctgctggtc ggtctgcata cagccactga actgtggctc 901 atcctcggcg atttggggca gcccattttg gagactgtta agcagttggc ctgccgggcc 961 atcaccctga ttgtctggcc cgttctcctc tacatcctgt tcttctacat tcacctgagt 1021 gtccttaacc gcagcggcaa cggagatggg ttctatagtt cggcctttca gtccaggctg 1081 atcggcaact ccctatataa tgccagcatg cccagagatg tcgcctacgg atcgctagtg 1141 acaatcaaga accacaagac gggcggaggc tacctgcact cgcatcatca cctgtatccc 1201 aagggatctg gcgctaggca gcagcaggtt accacttaca cccacaagga cgagaacaac 1261 aagtggctaa tcaggccgca caacaagccg ggtccaccaa agggcaaggt acagatcctc 1321 cggcacgggg acctcgtccg cctgactcac atggcgacca ggagaaatct gcattcccac 1381 aacgaacctg cacccatgac caagaagcat ttgcaggtca caggctatgg cgagttggga 1441 ctaggcgatg ccaacgacgt ctggcgcgtg ttgattgtgg gcggcaaggt caacgaaacg 1501 gtacacacgg tcacttcccg tctcaagttc atccacctgc tgcagaactg cgccctgacc 1561 tccagtggga agcagctacc gaaatggggg ttcgaacagc aggaggtgtc atgcaatccc 1621 aacgtgcgcg acaagaactc gcagtggaac gtcgaggaca acgagcacaa gttgatgccc 1681 agtgtaagct ttagcgtgta tgcgcccggc ttctttgccc gcttcctcga atcccacgcc 1741 gtaatgctgc agggaaacgc aggactcaag cccaaagaag gcgaggtcac cagcagaccc 1801 tggcagtggc caatcaacta caggggccag ttcttctccg gcagcagtta ccgcatctac 1861 ttgctgggaa acccgttgat ttggtggagt aatctggttt tcctggccct tttcgtcacg 1921 gttttcctgt gcaacgcagt tgttcagcaa agaagagctg gcttcgcccg atcggcggcc 1981 caaaatcaag cccaagttcc cgattcggaa acagtggccc aggacgagga gagtgagcac 2041 tccaccacgg acatctgcag ttgttgtact ccggcgaagg agatagtccc aaaggcagtt 2101 cccagtgggt ccccggaggc acccaacccg gcgcagtcct taagggcggc cgcctggctt 2161 tttctgggct ggatgctcca ctatttgccc ttctgggcga tgggacgggt gctctacttc 2221 caccactatt ttccggcctt gatcttcaac tccttgctga cgggcgttat gtacaactac 2281 attttgaggg ttctgcccaa atggattcac cacgttatcc tcggactggt tctctcgatc 2341 ctggtgtata gttttgccgc cttctcgcca cttgcttacg gaatgagtgg tcctctagcc 2401 aacgagccga actctacaat gtacaatctc aagtggcttt ctacctggga gttctagtta 2461 atataacctt aagcattttg tggttcaata agtgttttaa taatccttta aagctccaga 2521 acataactca tatgcatctt tgtgaaaatg aaaaccccaa ataggcaact atttattatt 2581 tatgagtagg tataatgatt aatttataga atacgcttaa ctctacgtac tgtttacaaa 2641 caaaaacaaa aaaaaaacca ttggtaaaag t