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LOCUS NM_130483 3352 bp mRNA linear INV 26-DEC-2023 B (CG3777), mRNA. ACCESSION NM_130483 VERSION NM_130483.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3352) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3352) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3352) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3352) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3352) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3352) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3352) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3352) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3352) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3352) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3352) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3352) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3352) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3352) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3352) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3352) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3352) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3352) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3352) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3352) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3352) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3352) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3352) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_130483.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3352 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3352 /gene="CG3777" /locus_tag="Dmel_CG3777" /gene_synonym="BEST:CK01670; CK01670; Dmel\CG3777; EG:125H10.1" /map="1A1-1A5" /db_xref="FLYBASE:FBgn0024989" /db_xref="GeneID:30979" CDS 184..2823 /gene="CG3777" /locus_tag="Dmel_CG3777" /gene_synonym="BEST:CK01670; CK01670; Dmel\CG3777; EG:125H10.1" /note="CG3777 gene product from transcript CG3777-RB; CG3777-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_569839.2" /db_xref="FLYBASE:FBpp0070065" /db_xref="GeneID:30979" /db_xref="FLYBASE:FBgn0024989" /translation="MLLKVFLLVFIATHHLVDSAGPLSNIASESKPKSFEEILPSAVP FETSHKHPGAGEWVEGFQTSHKISIRATDSADYSMNLLPTKERPELNPVLSALINEDV MKSIEAKRAIEEEELAEVRREIEQAAVLELAQKRGFTTTETPALLLTTLPTAGKKLDN LDEDIVLDPHEDFINQNFALESAGSENSKKSRIEIKKGPNGQDYEYEYVYYYEEDDDS SKVDPSAEPDTRGKTRYTNIERSTTATPSGNSLQSDKAKGRSSDTSEDIEAERLPMIT RFPSRGKNIEVPPTAALDSLEIAAERKKISVKRPSLELVDSATFNTDEKQTKAARKGE NELKPVIAIEQEEAARKKMQQVKEEQARKEKETEMSIDQEDFEQTTPSMEKAALDLYA ILTNENLNNEQTTVIPDTVGSEGFTTLATETASTDEDEAGVMTTLINEISSSTSTTTT AATTTTTTTTTEPPTTTSTTTTTTAAPSLFGGRRAGLSGLGGRNRFKLTRAEGGSTTT STTEASVAAETNKTGRNRFSRPSIGGRSRPGARTTTAPDATSVAAPDAEEGIVVAKEV KPVSTSFARGRPRNRFSLRVSTTTARPSEESPAEDDAPAESSSTTTRSTLRGRPGLGL RGRSRTTTTKAPASSEGAEAVEPNATASSEDVKSGLISPSTGESGRPSRFNIHRAGSN RLLSRGKLGRSGVSTEAPKESQTAEDSAAESSSHLNDVKEEQMSAGEFSEKTNEAGDS AAVVPAAPVSGLNRLRTRPRLNALTHKTDAVKPKASAAPAPAPRKINPLLAKRRLQLG ATSTTESPAEEEHLALDSSAEQSDKEESFAGGSNETGGEGPGKPEHETTEATEATTKQ QPRGLGLLGQRRRLPLRKPGTIL" ORIGIN 1 ttcaagtccc cctagcggac ttatattagt tgaaaaattg attgtatatt tttgaaagct 61 gaagcacgca gttgactttc aaaagtgtca ttaaaatcta tgaaaaatcg cagttagcga 121 aaaagttgct gtagcagcat tgaagtcgcc taggagcaac aagaacaaca atcacatctc 181 aaaatgcttc tcaaggtatt tttactggtc ttcatcgcca cccaccactt ggtagactca 241 gcgggtcccc tttccaatat agccagcgaa agtaaaccaa aatcgttcga ggagattttg 301 ccttcggcgg ttccctttga gacctcacac aaacatccgg gtgccgggga gtgggtggag 361 ggatttcaaa cctcccataa aataagcata agggccaccg attccgctga ctattcgatg 421 aatctgctgc ctactaaaga gcgacccgaa ttgaaccccg ttttgagtgc acttatcaac 481 gaagatgtta tgaagagcat cgaggccaaa agagccatag aagaagagga gctggccgag 541 gttaggcgtg aaattgagca ggccgccgtg ttagagttgg cccagaagag gggctttacc 601 actactgaga cacctgctct tctgttgacg actttgccca cagctggcaa gaagctcgat 661 aacttggatg aggacatagt cctggatcct cacgaagatt ttatcaacca aaattttgcc 721 ctggagagtg cgggtagtga gaacagcaag aaatcccgaa tagagattaa aaagggaccc 781 aatggccagg actacgagta cgagtatgtc tattactatg aagaggacga tgactcaagc 841 aaggtggatc catctgcaga gcccgacacg cgtggtaaga ctagatatac caatatcgag 901 aggagcacga cggccactcc gagtggaaat agcctacaga gtgacaaggc caaaggaaga 961 tcatctgata cctctgaaga tatagaggct gaacggcttc cgatgatcac tcggtttccc 1021 agtcgtggca agaacattga agtgccacca acagcagctc ttgattcttt ggaaatcgct 1081 gccgagcgca agaagattag tgttaagcgc cccagtttgg agttggtgga tagtgctacc 1141 ttcaacacgg atgagaaaca gaccaaggca gctcgcaagg gtgaaaatga attaaaacca 1201 gtaattgcta tcgaacagga ggaggcagcc agaaagaaaa tgcaacaggt taaggaggag 1261 caggcaagga aagagaagga gaccgaaatg tcaatcgatc aggaggattt tgagcagacc 1321 acgccgtcca tggagaaggc cgctctagat ctttatgcca tattgaccaa tgaaaacctc 1381 aataacgaac aaactactgt aattccggat accgtaggtt cagagggttt caccactttg 1441 gcaacagaaa ctgcaagtac tgatgaggat gaggccggtg tcatgaccac gctgattaat 1501 gagatttcat cgagtaccag caccactacg acggcagcaa caaccaccac gactacaaca 1561 acaacggaac cacctacaac aacctccacc actacaacaa ccacggctgc tccctctctt 1621 tttggtggaa ggagagccgg cttgagtggt ttgggcggac gtaatcgctt taagttaacc 1681 agggctgaag gtggcagcac caccactagc accactgagg catcggtggc tgcagaaaca 1741 aacaagactg gtagaaatcg tttttcgcgc ccctcgatag gagggcgttc tcgacccgga 1801 gctcgtacca ccacagcacc agatgccaca tcagtagctg cccctgacgc cgaggagggt 1861 atagtggttg ccaaggaagt caagcctgtc agtacgtcct tcgcacgagg aagacctcgc 1921 aaccgcttca gcttgcgcgt ctcaaccacg actgcgcgac ccagcgagga atctccagct 1981 gaagatgacg cccccgccga atcttcatca acgactacaa gaagcacatt gaggggtcgt 2041 cccggacttg gattacgtgg acgcagtcgt acaaccacta caaaggcacc cgctagttca 2101 gagggtgccg aagcggtaga gcctaatgcc actgctagtt ccgaagacgt caagtccggg 2161 ttgatttcgc cttctaccgg ggaatcaggg cgtccgtccc gttttaacat tcaccgcgct 2221 ggtagcaatc gtctgttatc ccgcggaaaa ctgggaagat cgggagtaag cacggaagca 2281 cccaaggaaa gtcaaactgc cgaggattcc gccgccgaaa gcagtagtca cctcaacgac 2341 gtcaaagagg agcagatgtc cgctggcgag tttagcgaaa agacgaacga agcaggtgat 2401 tccgctgccg tcgttccagc ggctcctgta tccgggttaa atcgtcttag aactcgacca 2461 cgtctcaacg ccctaacgca taagactgat gcggttaagc ctaaggcatc cgcagccccc 2521 gcccccgcgc caaggaagat taatcctctg ttggcaaagc gacgactcca actgggagcc 2581 acttccacca cagagtcccc cgctgaggag gagcatttag cgctggactc ctccgcggag 2641 cagtccgaca aagaggagtc gtttgccgga ggaagcaacg agacgggcgg agaaggcccc 2701 ggaaagccgg agcatgaaac tacggaagcg acggaggcaa caactaagca gcagccccgc 2761 ggtcttggac ttttaggaca gcgtcgtcgt ctgccgctcc gcaaacccgg aacgatcctg 2821 taaaacaaca aattgccatc tacccgtttg aatcctgtaa taataacttg cccagatttg 2881 ctgcagcata ctcctagagt tgggctgggt ggcccacaca agcgataata acatttaaca 2941 attgtttgat atatgtactt ttttttaagt ttttttctcc tcgtacttgc cttccaaaaa 3001 ctcgttagct ttgtacacat acgcctttaa ttaaaatact gatagatgcg taccacttac 3061 gtcattagaa aaagtcacca aaaggaaaaa tatggacgac acaagaacga ggagatctaa 3121 gccactcgta gaccactaag cacaaaatac ccgaaaaata taactgatat gattgccaac 3181 taccctgcga ctatgtaaac ccaaccttcc cccctccttt accctcttat tcaaatcgac 3241 gcgtgtgtag aagatacact tattatattt tttttctgag atacaattat aaacacaaaa 3301 acgactttta actatatatt aaataaaaac aaaaggaaaa acataataat tt