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LOCUS NM_130481 1492 bp mRNA linear INV 26-DEC-2023 A (CG13375), mRNA. ACCESSION NM_130481 VERSION NM_130481.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1492) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1492) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1492) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1492) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1492) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1492) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1492) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1492) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1492) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1492) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1492) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1492) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1492) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1492) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1492) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1492) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1492) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1492) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1492) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1492) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1492) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1492) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1492) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_130481.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1492 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1492 /gene="CG13375" /locus_tag="Dmel_CG13375" /gene_synonym="Dmel\CG13375; EG:BACR37P7.8" /map="1A1-1A1" /db_xref="FLYBASE:FBgn0040370" /db_xref="GeneID:30976" CDS 396..1316 /gene="CG13375" /locus_tag="Dmel_CG13375" /gene_synonym="Dmel\CG13375; EG:BACR37P7.8" /note="CG13375 gene product from transcript CG13375-RA; CG13375-PA" /codon_start=1 /product="uncharacterized protein, isoform A" /protein_id="NP_569837.2" /db_xref="FLYBASE:FBpp0070098" /db_xref="GeneID:30976" /db_xref="FLYBASE:FBgn0040370" /translation="MRGRHLRRRFSLQPSFMKDDNAEDKPKRDKVGRNNAVDDAIGPA NARHKIVVMGSAKVGKTSIITQFLYNTFSTKYKRTIEEMHQGNFSIAGVSLTLDILDT AGSYEFPAMRALSISSADAFILVYDVTDATTFEEVRTIRDQIHETKATTAVPIVVVGN KIDLLADGETEREVEYATTESVVTVDWENGFVEASASSNENITQVFKELLAQAKITYN LSPALRRRRQSLPQQIGNNGPSTPLHHHQHTQHHNSGGGTSASTSSAAAAASSSGGSG SHAPTPAQLQHLQRIQERSLGAKRNSCIIS" misc_feature 540..1112 /gene="CG13375" /locus_tag="Dmel_CG13375" /gene_synonym="Dmel\CG13375; EG:BACR37P7.8" /note="Ras - dorsal-ventral anterior localization (Ras-dva) family; Region: Ras_dva; cd04147" /db_xref="CDD:206714" misc_feature 555..578 /gene="CG13375" /locus_tag="Dmel_CG13375" /gene_synonym="Dmel\CG13375; EG:BACR37P7.8" /note="G1 box; other site" /db_xref="CDD:206714" misc_feature order(558..563,702..707) /gene="CG13375" /locus_tag="Dmel_CG13375" /gene_synonym="Dmel\CG13375; EG:BACR37P7.8" /note="putative GDI interaction site [polypeptide binding]; other site" /db_xref="CDD:206714" misc_feature order(561..581,696..698,705..707,873..878,882..884, 978..983) /gene="CG13375" /locus_tag="Dmel_CG13375" /gene_synonym="Dmel\CG13375; EG:BACR37P7.8" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206714" misc_feature order(576..581,618..620,624..626,645..650,687..692, 696..698,702..707,984..986) /gene="CG13375" /locus_tag="Dmel_CG13375" /gene_synonym="Dmel\CG13375; EG:BACR37P7.8" /note="putative GEF interaction site [polypeptide binding]; other site" /db_xref="CDD:206714" misc_feature order(621..626,639..650) /gene="CG13375" /locus_tag="Dmel_CG13375" /gene_synonym="Dmel\CG13375; EG:BACR37P7.8" /note="putative effector interaction site [active]" /db_xref="CDD:206714" misc_feature 621..647 /gene="CG13375" /locus_tag="Dmel_CG13375" /gene_synonym="Dmel\CG13375; EG:BACR37P7.8" /note="Switch I region; other site" /db_xref="CDD:206714" misc_feature 627..629 /gene="CG13375" /locus_tag="Dmel_CG13375" /gene_synonym="Dmel\CG13375; EG:BACR37P7.8" /note="G2 box; other site" /db_xref="CDD:206714" misc_feature 696..707 /gene="CG13375" /locus_tag="Dmel_CG13375" /gene_synonym="Dmel\CG13375; EG:BACR37P7.8" /note="G3 box; other site" /db_xref="CDD:206714" misc_feature order(702..743,753..758) /gene="CG13375" /locus_tag="Dmel_CG13375" /gene_synonym="Dmel\CG13375; EG:BACR37P7.8" /note="Switch II region; other site" /db_xref="CDD:206714" misc_feature 873..884 /gene="CG13375" /locus_tag="Dmel_CG13375" /gene_synonym="Dmel\CG13375; EG:BACR37P7.8" /note="G4 box; other site" /db_xref="CDD:206714" misc_feature 978..986 /gene="CG13375" /locus_tag="Dmel_CG13375" /gene_synonym="Dmel\CG13375; EG:BACR37P7.8" /note="G5 box; other site" /db_xref="CDD:206714" ORIGIN 1 acgcagcgtg ttgttatatc gcatctgccc caaaacaatt ttcatctcaa cagctacaaa 61 aacagaacac tcttagcaag aaatcaaata ccaccctaga taaaaaataa acggaaaatt 121 tgttatttct ttcgtacatg gtgaacacag gaatacaacg cgaagattag catttttaat 181 attctggtgg aaagacgaac cgcaaaggga aaaacgctaa agaataagca aagtacgatg 241 gactaacagt ttgccagtga gcgctacatt ttcagctaag ctgcaaatat aaaacggcat 301 acgaagcatg agcattaaat cttaggcgag ggtcgttgac ttatcagtag cctcaataat 361 cagggagacc actcaggtat tccaaggatt acaatatgcg tggccgccac ttacgccgcc 421 gattcagcct gcagccctcg tttatgaagg acgacaatgc cgaggataag ccaaagcgtg 481 ataaggttgg tagaaacaac gcggtagatg atgccattgg accggccaac gcacgccaca 541 aaatcgtcgt catgggctct gcaaaagtgg gaaaaacgtc aataatcacc cagtttctgt 601 acaatacatt tagcaccaag tacaagcgga ccattgagga aatgcaccaa ggcaactttt 661 ccatcgccgg cgtgagcctt acccttgata ttttggacac tgccggctca tacgagtttc 721 cggcgatgcg agctctttcc atatcctcgg cggatgcttt tattctggtc tacgacgtaa 781 ccgatgccac cactttcgag gaggtgcgca caattcgcga tcagatccac gagactaagg 841 ccactaccgc tgttccaatt gtagttgtcg ggaacaagat cgatctctta gcagatggag 901 aaactgagcg agaggttgag tacgccacca cagaatcggt tgttactgtg gactgggaga 961 acggatttgt agaggcttca gcttccagta atgaaaacat tacccaggtg ttcaaggaac 1021 tgctagccca ggcaaaaata acttacaatc tgagtccggc cctccgtcgt cgtcgacagt 1081 cgttgccgca gcagattggt aacaatggac ccagcacccc gttacaccac caccagcaca 1141 cccagcacca caattccgga ggtggtacct ccgcttctac ctcttcggca gctgcagctg 1201 cgtcatcttc cgggggatcc ggatcccatg ctcctacacc tgcccagctg cagcacctcc 1261 aaagaatcca ggagcgaagc ttgggcgcca aacgcaactc gtgcatcatt tcctaaacag 1321 gccaaactga aagaggtcta atatataatg gttttcaaaa ccttttcaat agtctataat 1381 aacatggggc gtttttctaa actcaaacaa cagaactaat attaacagaa gaggcagatt 1441 aattctatta acatgagagt cttgtaaggg aagacaacat tctgggtgag ct