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LOCUS NM_080344 2397 bp mRNA linear INV 26-DEC-2023 2-related protein, transcript variant B (PPP4R2r), mRNA. ACCESSION NM_080344 VERSION NM_080344.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2397) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2397) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2397) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2397) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2397) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2397) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2397) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2397) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2397) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2397) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2397) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2397) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2397) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2397) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2397) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2397) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2397) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2397) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2397) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2397) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2397) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2397) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2397) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_080344.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2397 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2397 /gene="PPP4R2r" /locus_tag="Dmel_CG2890" /gene_synonym="BcDNA:LD29930; CG2890; Dmel\CG2890; PP4R; PP4r2; PP4R2; PP4R2r; Ppp4R2; PPP4R2; R2" /note="Protein phosphatase 4 regulatory subunit 2-related protein" /map="9D1-9D2" /db_xref="FLYBASE:FBgn0030208" /db_xref="GeneID:31979" CDS 132..1961 /gene="PPP4R2r" /locus_tag="Dmel_CG2890" /gene_synonym="BcDNA:LD29930; CG2890; Dmel\CG2890; PP4R; PP4r2; PP4R2; PP4R2r; Ppp4R2; PPP4R2; R2" /note="CG2890 gene product from transcript CG2890-RB; CG2890-PB; PPP4R2r-PB; PP4 regulatory subunit; protein phosphatase 4 regulatory subunit 2-related protein" /codon_start=1 /product="protein phosphatase 4 regulatory subunit 2-related protein, isoform B" /protein_id="NP_525083.2" /db_xref="FLYBASE:FBpp0071387" /db_xref="GeneID:31979" /db_xref="FLYBASE:FBgn0030208" /translation="MVTMENSDEIMQILERFTDLKQKEIPKELEEYLQYVAKTGDTIF KWSSLKYLFREKLLSVIKHFNEDSPRLEEIPNYPNVDPFNYETMKSSLLERLDLFNAA PFTVQRLCELLIDPRKQYSRIDKFMRALEKNILVVSTIDPGRKRTESENGDSLDSVVN GDLSMEVNIDIEMENNNGNADEGSSPGAGSAGCAQKASCPRSDDNDQPKAKKAKLEID GEERSEASDETDTEVATRVKNEKDEKNDNDETDSPHEAAEIEEPDEEVDEADQETKTT KQPAYGSQKEGEQEESFPSSADDEAEDPMVSKSIEAEKELVAQEKKREEDKKVAIEPK EEIVKKEEVVESDKPDGKVAQLGDKAVVKKSTPPADGENQEPVKVKAENEKEEKKHAP IKTEKQDDIDSTETDDAPSAEKPAEEKIASSESKPKTKSEDDPEAETKKSQPEKTETE AAEKSVSDEKQAAEPNAESENRNDLTTSKATEAAQESVEKSPVEDASSPAVEDLAAAT TPQSPLGAADSAAETPPAETGDDSQASPLVAAVTPPVLALNDQPMEDTPAEEEARVSP SATVEEVVMAESANAGAMATEEAAKDDPAAMEIDDTSQEVMMQ" misc_feature 168..1037 /gene="PPP4R2r" /locus_tag="Dmel_CG2890" /gene_synonym="BcDNA:LD29930; CG2890; Dmel\CG2890; PP4R; PP4r2; PP4R2; PP4R2r; Ppp4R2; PPP4R2; R2" /note="Region: PPP4R2; pfam09184" /db_xref="CDD:462710" misc_feature <759..>1637 /gene="PPP4R2r" /locus_tag="Dmel_CG2890" /gene_synonym="BcDNA:LD29930; CG2890; Dmel\CG2890; PP4R; PP4r2; PP4R2; PP4R2r; Ppp4R2; PPP4R2; R2" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature <1452..1874 /gene="PPP4R2r" /locus_tag="Dmel_CG2890" /gene_synonym="BcDNA:LD29930; CG2890; Dmel\CG2890; PP4R; PP4r2; PP4R2; PP4R2r; Ppp4R2; PPP4R2; R2" /note="DNA polymerase III subunit gamma/tau; Region: PRK12323; cl46901" /db_xref="CDD:481241" ORIGIN 1 tttgtgtgtc tacctcgagg tggaaaatgt tcataacttt gccggccggt ttttgatctc 61 ctttctttgc tcaccacttt ttccccccaa atcatgatca tagctttccc ctccgctcag 121 cgatcgccta aatggtcacc atggaaaaca gcgacgagat aatgcagatc ctagagcgct 181 ttacggatct taaacaaaag gagatcccaa aggagctgga ggagtaccta cagtatgtgg 241 ccaagaccgg cgacaccatc ttcaagtggt ccagcctgaa gtacttgttc cgcgagaagc 301 tgctcagcgt gatcaagcac tttaatgagg attcgccgcg tttggaggag attcccaact 361 atccgaatgt ggaccctttc aactacgaga ccatgaagtc ctcgttgctg gagcgcttgg 421 accttttcaa tgcagctcct tttaccgtgc agcggttgtg cgagctacta atcgatcctc 481 ggaagcagta ctcgcgcatc gataagttta tgcgtgcttt ggaaaagaat attttagtgg 541 ttagcacaat cgatcctgga cgcaagcgta ccgaaagtga gaatggcgac tcgctggact 601 cagtggtcaa cggggacctc tccatggagg tgaacattga cattgaaatg gagaataata 661 acggtaacgc cgatgagggc tcatctcccg gcgccggttc ggcaggttgt gcccagaagg 721 caagctgccc gcgttcggac gacaatgatc agcccaaggc caagaaggca aaactggaga 781 tcgatggtga agagcgttcg gaagcgagcg atgaaacgga cacagaagtg gcaaccaggg 841 tcaaaaatga aaaggatgag aagaatgaca acgatgagac tgattcgccg catgaggctg 901 ccgagatcga ggagcccgat gaagaggtgg atgaggctga tcaggagacc aagaccacca 961 agcagcctgc ttacggcagt cagaaggagg gcgagcagga ggaaagtttc ccatcatctg 1021 ccgatgacga ggcggaggac ccaatggtga gcaaatccat agaagctgag aaagaacttg 1081 ttgctcagga aaagaagagg gaggaggaca aaaaggtggc aatcgagcca aaagaagaga 1141 ttgtaaagaa ggaagaggtc gtcgagtctg ataaaccgga cggaaaggtg gcacagttag 1201 gcgacaaggc agttgtcaag aaatctacac cgcctgccga tggggaaaac caggagcctg 1261 tcaaagtcaa ggcagaaaac gaaaaggagg agaaaaaaca tgcaccaatt aaaactgaaa 1321 agcaggacga tatcgactct actgagactg acgatgcccc atcagcagaa aaacccgctg 1381 aagaaaagat agcttcctcc gaatcgaaac cgaagaccaa atctgaggac gatccagagg 1441 ccgagaccaa gaagagccaa ccggaaaaga ctgaaactga ggcggccgag aagtcggttt 1501 cggatgaaaa gcaggctgcc gagccgaatg cagaaagcga gaataggaac gacttgacca 1561 cttccaaagc gaccgaggca gcccaggagt cagtcgagaa gtcgccggtt gaggatgctt 1621 ctagtcctgc tgtggaagat ctggcagctg caaccacacc gcaatctcct ttgggcgctg 1681 ccgattccgc tgctgagacg ccgcctgctg agacaggcga tgactcgcag gcttcgccct 1741 tggtcgccgc tgtaactccg cctgtcttgg ccctcaacga ccagcccatg gaggatactc 1801 cagccgagga ggaggcacgc gtctcgccgt cggccaccgt cgaggaggtg gtaatggccg 1861 aaagcgccaa tgccggcgca atggccaccg aagaggccgc caaggacgat ccggccgcca 1921 tggagatcga tgacaccagc caggaggtga tgatgcagta gattgggccc attcaggagc 1981 cgtaaacacc tttatttaac tactactcca tataactagt attttaagac aaaagccgca 2041 aataatgtag atgtaatcct gccctgcttt cccttttata tcccaacaga tcccaatact 2101 ttccaataag gcaagcagtg gtagctcccc cttcgtagcc gtaagtcgca gcccggacac 2161 gatccaacac tagactctgt tggcggttcg gtgtttcatg ctctgtggcc tccccttttg 2221 ttttgtattt atgttgtgct gtccaccccc ttgcgaatga caattttgag tatctcaacc 2281 ccctcgccac tgttcccaaa tttttttaaa taatctagtt ttagacgctg tccgtggcac 2341 gaacttcggc aagctgtgag cgcgattaaa cacagaataa acactactcg taataac