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LOCUS NM_080313 3595 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_080313 VERSION NM_080313.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3595) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3595) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3595) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3595) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3595) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3595) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3595) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3595) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3595) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3595) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3595) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3595) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3595) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3595) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3595) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3595) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3595) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3595) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3595) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3595) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3595) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3595) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3595) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_080313.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3595 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3595 /gene="egh" /locus_tag="Dmel_CG9659" /gene_synonym="4ManT; beta1; CG9659; Dmel\CG9659; EG:BACR25B3.8; Egh; l(1)3Ae; l(1)zw4; zw-4; ZW-4; zw4" /note="egghead" /map="3A6-3A6" /db_xref="FLYBASE:FBgn0001404" /db_xref="GeneID:31239" CDS 1494..2867 /gene="egh" /locus_tag="Dmel_CG9659" /gene_synonym="4ManT; beta1; CG9659; Dmel\CG9659; EG:BACR25B3.8; Egh; l(1)3Ae; l(1)zw4; zw-4; ZW-4; zw4" /note="CG9659 gene product from transcript CG9659-RC; CG9659-PC; egh-PC; zeste-white 4; egghead; beta1,4-mannosyltransferase" /codon_start=1 /product="egghead, isoform C" /protein_id="NP_525052.1" /db_xref="FLYBASE:FBpp0070423" /db_xref="GeneID:31239" /db_xref="FLYBASE:FBgn0001404" /translation="MNSTTKHLLHCTLLITVIVTFEVFSGGIKIDENSFTLVDPWTEY GQLATVLLYLLRFLTLLTLPQVLFNFCGLVFYNAFPEKVVLKGSPLLAPFICIRVVTR GDFPDLVKTNVLRNMNTCLDTGLENFLIEVVTDKAVNLSQHRRIREIVVPKEYKTRTG ALFKSRALQYCLEDNVNVLNDSDWIVHLDEETLLTENSVRGIINFVLDGKHPFGQGLI TYANENVVNWLTTLADSFRVSDDMGKLRLQFKLFHKPLFSWKGSYVVTQVSAERSVSF DNGIDGSVAEDCFFAMRAFSQGYTFNFIEGEMYEKSPFTLLDFLQQRKRWLQGILLVV HSKMIPFKHKLLLGISVYSWVTMPLSTSNIIFAALYPIPCPNLVDFVCAFIAAINIYM YVFGVIKSFSLYRFGLFRFLACVLGAVCTIPVNVVIENVAVIWGLVGKKHKFYVVQKD VRVLETV" misc_feature 2043..2609 /gene="egh" /locus_tag="Dmel_CG9659" /gene_synonym="4ManT; beta1; CG9659; Dmel\CG9659; EG:BACR25B3.8; Egh; l(1)3Ae; l(1)zw4; zw-4; ZW-4; zw4" /note="Glycosyl transferase family group 2; Region: Glyco_trans_2_3; pfam13632" /db_xref="CDD:433365" ORIGIN 1 ccactggatt tcgacaacgg cgcgcgacgg tcacttggcg aaacgaaaat cgaaaaaacc 61 gacgaatcga aactcggaga tcacggattc gattcacttg attcagaacc ttgccgaatc 121 cgaatgcccc tgcgatgcgc gcgccaaccc gctgaacaaa agtcgccaag tgaattttgc 181 aattaatttg caaatcaata tcgctccgcc gccgtcgcgc acacacacac acacgcaagc 241 acccgcaccg cgcacacata cacacacaca cacacacata gggaccgcga cacgcatagt 301 gagaaagaag tggcaatata agcaaaaaaa agaaaaaaaa tacaacggtc gtgggaaaat 361 cgattttcct tttaaacaaa tcgctgttag cttgagcttt tccaagcgcc tctgctgcaa 421 ttccttcgtt tttttttcct gtgcaaagta cgccgagaga gcggcgtgaa ccggtgcaga 481 gagagagaga ttaagtgaga aggggtgaga gagtggaaga aggtgttcat tggcagaaaa 541 ttagcaaggc gacaaacgtt tataaatata aacacatata ttccaatata aaaatcgcaa 601 atattaatga cgagacaaga gcgcctgcaa caacagcaac aactgcaaca acagcagccc 661 agcaaccagg gattctaatt cgaaaataac ccaaacaaat ccaaatcggc gggagcgaca 721 aggaggagag gagagtgcta aagagaggcg ccaacaaaag tgtatcattt aggagcggca 781 cacccaagaa cgcggaaaac tcccgcccac cctcgccacg cccctcgccg accagcacac 841 ccattaccaa taccaataac agcaataata acaacaacaa caataacaac aacagtctgc 901 agtgaagaaa cgcagaggaa aagacaggcg gagacagata taaaacccaa acattcggac 961 actcgctctt cttcttccca atccgttttg gcatggaaaa catgaaatgt ctgaccagga 1021 aacagagctg agagtctcaa atgcaagcaa gccaacgcca gcggcagcag caaccacgtc 1081 caagttcacc aacagctgaa gaggaagcgg aggagacgag accgcgaaac agtacagcca 1141 ggagctgata gagcatccgg tgcaccacat atattgacct gggggtgcct ggaccaaaac 1201 aacttccgtt cctctcggcg gcaatcgctg agctttcagg cacaaacaac ttacaaacat 1261 ttagtatctt tagccagtta gccgctggct gactcatcca cagtcgtttg agtcgggatc 1321 gaacgaacga acaaacaagg cagataagga tttccgattg cggaattgcc agaattgcac 1381 aagtctactt aaggctctgg aggaccaaag ccacttaagt tacgttatta cacacaaaaa 1441 ctaaaaactg aaaaaacaaa aaacaaaaaa caagacacaa cccgcaaacc aagatgaact 1501 ccaccacaaa gcatctgctg cactgcacac tgctcatcac tgtgatagtt accttcgaag 1561 tattctccgg cggtattaag attgacgaga actcgttcac gctcgtggat ccttggactg 1621 aatacggcca attggccacg gttctgctgt acttattgcg ctttctcacg ctgctcacgc 1681 tgccccaggt gctgttcaat ttctgcggcc tggtattcta caatgccttc cccgagaagg 1741 tcgtcctcaa gggcagcccc ctgctggcgc ccttcatctg catccgtgtg gtcacgcgcg 1801 gcgacttccc ggatttggtt aagacgaatg tgctgcgcaa catgaacacc tgcctagaca 1861 cgggactgga gaactttctc atcgaagtgg tcacggacaa ggcggtgaat ctgtcacagc 1921 atcgacgcat ccgagagatc gttgtgccca aggagtacaa gacgagaacc ggggcgttgt 1981 tcaagtcgcg tgccctgcag tattgcctgg aggataatgt gaacgtgctg aacgacagcg 2041 actggatcgt ccatctggat gaggagacgc tgctcacgga gaattcggtg cgtggtatca 2101 ttaactttgt gctggatggc aagcacccgt tcggccaggg cctgatcacc tatgccaacg 2161 agaacgtggt caattggctg accacattgg cggacagctt tcgggtctcc gatgatatgg 2221 gcaagctgcg tctgcagttc aagctctttc acaagccgct cttcagctgg aagggcagtt 2281 atgtggtcac ccaggtgagt gctgagcgtt cagtgtcctt tgacaacgga atcgacggtt 2341 cggtggccga ggattgcttc ttcgcgatgc gggcctttag ccagggctac acgttcaact 2401 tcatcgaggg cgaaatgtac gagaagtcgc cgttcacgct gctggacttc ctgcagcaga 2461 ggaaacgatg gctccagggc attctgctgg tggtccactc caagatgatc ccgtttaagc 2521 acaagctcct gctgggcatc agtgtctatt cgtgggtcac catgccgctg tccacgtcga 2581 acatcatctt tgcggcactg tatcccattc cctgcccaaa tctggttgac tttgtgtgcg 2641 ccttcatcgc ggccattaat atctacatgt acgtctttgg cgtaatcaag tccttttcac 2701 tgtaccgctt cggtttgttc cgattcctgg cctgcgtgct gggtgcggtg tgcacgatac 2761 ccgtgaatgt ggttatcgag aatgtggctg tcatttgggg cctggtgggc aagaagcaca 2821 agttctatgt ggttcagaag gatgtgcgcg tactggagac tgtctagact attttgtgga 2881 actggatgag ggaggaaagg agtcatcgag tgcagccatg gtcatcatat cgcccacaga 2941 aaccaaaaac caaattaagc aaggcaaaaa caaacgaaat ttcgcacaat ttcgccaggc 3001 tcagtgcgtt gtcctggcac aatctgattg atttacttta tttgtacatt ttataagcat 3061 aagagtcact caacaatcac acccacaccc acacatacac ctgcacacac gcacatataa 3121 ttgttgtttc gttctaaagt catggtcatt cacaactttg ccaaaaagaa aaagcaaatc 3181 agatcagatc agatcataga aatcagcacg gaataaacgg aataccaggg tgaccgaccc 3241 aaagaacaaa tgcaatagac aacgtcttgg agcgagatct atgaagtgca tcactcacta 3301 gaaaatacaa ctattgcggc aataacaaca attggggcaa taacaatgat ccaagaggac 3361 cacacgcgaa aactctccat taagtgtaat ttcattatat atatatattt tttttttttg 3421 tatagtctgt agtgaaagaa tgcgctatat ttatataaac gtaaatattg tatgtacatt 3481 gtagatttat tattataatt acgattattt aaaaatgtgt acattgatgt attgaaaatc 3541 tgttaaatgt cattcacacc gaaaccaagg ttaaaaaaaa aagcgaaaag caaac