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LOCUS NM_080292 2279 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_080292 VERSION NM_080292.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2279) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2279) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2279) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2279) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2279) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2279) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2279) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2279) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2279) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2279) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2279) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2279) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2279) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2279) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2279) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2279) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2279) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_080292.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2279 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2279 /gene="Cyp4g1" /locus_tag="Dmel_CG3972" /gene_synonym="4g1; anon-WO0140519.102; ASC-T1; CG3972; cyp4g1; Cyp4G1; CYP4G1; Cyt-P450-A1; Dmel\CG3972; EG:165H7.1; P-450; P-450-A; P450; P450-A; P450A; scgamma; T1" /note="Cytochrome P450 4g1" /map="1B4-1B4" /db_xref="FLYBASE:FBgn0010019" /db_xref="GeneID:30986" CDS 108..1778 /gene="Cyp4g1" /locus_tag="Dmel_CG3972" /gene_synonym="4g1; anon-WO0140519.102; ASC-T1; CG3972; cyp4g1; Cyp4G1; CYP4G1; Cyt-P450-A1; Dmel\CG3972; EG:165H7.1; P-450; P-450-A; P450; P450-A; P450A; scgamma; T1" /EC_number="1.14.-.-" /note="CG3972 gene product from transcript CG3972-RA; CG3972-PA; Cyp4g1-PA; Achaete-scute complex transcript 1; cytochrome P450 A1; cytochrome P450-4g1" /codon_start=1 /product="cytochrome P450 4g1" /protein_id="NP_525031.1" /db_xref="FLYBASE:FBpp0070094" /db_xref="GeneID:30986" /db_xref="FLYBASE:FBgn0010019" /translation="MAVEVVQETLQQAASSSSTTVLGFSPMLTTLVGTLVAMALYEYW RRNSREYRMVANIPSPPELPILGQAHVAAGLSNAEILAVGLGYLNKYGETMKAWLGNV LLVFLTNPSDIELILSGHQHLTKAEEYRYFKPWFGDGLLISNGHHWRHHRKMIAPTFH QSILKSFVPTFVDHSKAVVARMGLEAGKSFDVHDYMSQTTVDILLSTAMGVKKLPEGN KSFEYAQAVVDMCDIIHKRQVKLLYRLDSIYKFTKLREKGDRMMNIILGMTSKVVKDR KENFQEESRAIVEEISTPVASTPASKKEGLRDDLDDIDENDVGAKRRLALLDAMVEMA KNPDIEWNEKDIMDEVNTIMFEGHDTTSAGSSFALCMMGIHKDIQAKVFAEQKAIFGD NMLRDCTFADTMEMKYLERVILETLRLYPPVPLIARRLDYDLKLASGPYTVPKGTTVI VLQYCVHRRPDIYPNPTKFDPDNFLPERMANRHYYSFIPFSAGPRSCVGRKYAMLKLK VLLSTIVRNYIVHSTDTEADFKLQADIILKLENGFNVSLEKRQYATVA" misc_feature 381..1742 /gene="Cyp4g1" /locus_tag="Dmel_CG3972" /gene_synonym="4g1; anon-WO0140519.102; ASC-T1; CG3972; cyp4g1; Cyp4G1; CYP4G1; Cyt-P450-A1; Dmel\CG3972; EG:165H7.1; P-450; P-450-A; P450; P450-A; P450A; scgamma; T1" /note="cytochrome P450 family 4; Region: CYP4; cd20628" /db_xref="CDD:410721" misc_feature order(474..476,525..530,549..551,561..563,582..584, 1164..1166,1173..1178,1185..1187,1371..1373,1383..1385, 1572..1580,1590..1604,1611..1616,1626..1628) /gene="Cyp4g1" /locus_tag="Dmel_CG3972" /gene_synonym="4g1; anon-WO0140519.102; ASC-T1; CG3972; cyp4g1; Cyp4G1; CYP4G1; Cyt-P450-A1; Dmel\CG3972; EG:165H7.1; P-450; P-450-A; P450; P450-A; P450A; scgamma; T1" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:410721" misc_feature order(528..530,1170..1175,1185..1187,1380..1382, 1386..1388) /gene="Cyp4g1" /locus_tag="Dmel_CG3972" /gene_synonym="4g1; anon-WO0140519.102; ASC-T1; CG3972; cyp4g1; Cyp4G1; CYP4G1; Cyt-P450-A1; Dmel\CG3972; EG:165H7.1; P-450; P-450-A; P450; P450-A; P450A; scgamma; T1" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:410721" ORIGIN 1 tcacagttga gcactggcgg ctgatatagc aacagtgcca tcttcagaag acaaaaagga 61 tttgcaccag aggaccaggg atcaggagca aagaagcaac agcaaccatg gcagtggaag 121 tagttcagga gacgctgcaa caagcggcgt ccagttcgtc gacgacggtc ctgggattca 181 gtcctatgtt aaccacctta gtgggcaccc tggtggccat ggcattgtac gagtattggc 241 gcaggaatag ccgggaatac cgcatggttg ccaatatacc atccccaccg gagttgccta 301 ttttgggaca ggctcatgtg gccgccggct tgagcaatgc cgagatcctg gccgttggct 361 tgggttacct caacaagtac ggagaaacca tgaaggcctg gttgggcaac gtcctgttgg 421 tgtttctaac caatcccagt gacatcgagt tgatcctgag tgggcaccag cacttgacca 481 aggcggagga gtatcgctac ttcaagccct ggttcggtga tggtctactg atcagcaatg 541 gacatcattg gcgtcatcat cgtaagatga ttgcccccac cttccaccag agcatcttga 601 agagcttcgt gcctacattt gtggatcact caaaggcggt agttgccagg atgggcttag 661 aagcgggcaa atcctttgat gttcatgact atatgtcgca gaccacggtt gacatcctgt 721 tgtctaccgc catgggtgtg aagaagcttc cggagggtaa caagagtttc gaatacgccc 781 aagccgtcgt cgacatgtgt gatatcatac ataagaggca ggttaaatta ctgtaccgcc 841 tggattccat ctacaagttt actaagcttc gcgagaaggg cgatcgcatg atgaacatca 901 tcttgggtat gaccagcaag gtggtcaagg atcgtaagga gaacttccaa gaggagtcac 961 gtgcgattgt tgaggagatt tctacacctg ttgccagcac tcccgcttcc aagaaggagg 1021 gtcttcgcga tgatctggat gatatcgatg aaaatgatgt gggcgccaag aggcgattgg 1081 ctcttctaga tgccatggtg gaaatggcta agaaccccga tatcgagtgg aacgagaagg 1141 acatcatgga tgaggtgaat acaattatgt ttgagggcca cgataccacc tcggcgggat 1201 ctagtttcgc cctctgcatg atgggaatcc acaaggacat ccaggctaaa gtcttcgccg 1261 aacagaaggc catcttcggg gataatatgc tgagggattg cacctttgcc gataccatgg 1321 agatgaaata tttggagcgc gtaattttag agactttgag gttgtaccca ccagtaccac 1381 ttatcgccag gcgtctggac tacgacctga agttggccag tggtccgtac acggttccca 1441 agggcactac ggtcatcgtg ctgcagtact gcgtgcacag acgtccagac atctacccca 1501 atcccaccaa attcgatccg gacaacttcc tacccgagag gatggccaac aggcattact 1561 actccttcat tccctttagc gctggaccca gaagctgtgt gggccgcaag tacgccatgc 1621 tgaagctaaa ggtcctgcta tccaccatcg tgaggaacta tattgtccac tccaccgaca 1681 cggaggcaga tttcaagctg caggctgaca tcatcctaaa gcttgagaat ggattcaatg 1741 tctcgttgga gaagcgtcag tacgccacgg tggcctagaa tccagaaatc taggaccccg 1801 actacacaca cgcaaccccg aacccgaaac cggaatccag ccctgtatat agatgatgaa 1861 taccgatgaa tatcccaaac cgaaaacttg atgacgaact tataaatcta aaacaccgaa 1921 taagaaccca acgcacaagc cagccagaga gtcaattaat ttttctttcg ttttttaact 1981 cgttactttt atatttgatt aatacctttt tgtttgttgg tctttagcga gtggtgcccc 2041 tatataatgt atacgtatat actatatatc cttttaacca actattcaac gcaactgttt 2101 gtgctcttca cctttttagt actcctactt ttaccactat ctatactttt ttttcgtagc 2161 catgtagtgt gatttttttt ctttattcta gtatttatta agtcaaatgg tttaaacgaa 2221 acccaaaaaa tatgaaaaat acacgtatgc gaggcacgta gccgatagag ctgcaaaac