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LOCUS NM_080148 2056 bp mRNA linear INV 26-DEC-2023 (SrpRalpha), mRNA. ACCESSION NM_080148 VERSION NM_080148.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2056) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2056) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2056) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2056) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2056) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2056) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2056) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2056) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2056) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2056) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2056) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2056) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2056) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2056) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2056) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2056) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2056) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2056) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2056) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2056) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2056) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2056) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2056) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_080148.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2056 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2056 /gene="SrpRalpha" /locus_tag="Dmel_CG2522" /gene_synonym="BEST:CK00309; CG2522; CK00309; Dmel\CG2522; Gtp-bp; GTP-bp; mAb 13D5" /note="Signal recognition particle receptor alpha" /map="10A6-10A6" /db_xref="FLYBASE:FBgn0010391" /db_xref="GeneID:47251" CDS 114..1958 /gene="SrpRalpha" /locus_tag="Dmel_CG2522" /gene_synonym="BEST:CK00309; CG2522; CK00309; Dmel\CG2522; Gtp-bp; GTP-bp; mAb 13D5" /note="CG2522 gene product from transcript CG2522-RA; CG2522-PA; SrpRalpha-PA; GTP-binding protein; GTP binding protein" /codon_start=1 /product="signal recognition particle receptor alpha" /protein_id="NP_524887.2" /db_xref="FLYBASE:FBpp0073336" /db_xref="GeneID:47251" /db_xref="FLYBASE:FBgn0010391" /translation="MLDFVVIFTKGGVVLWHSNASGNSFASCINSLIRGVILEERNTE AKYYEEDHLAVQFKLDNELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRLGD DYDFDREYRRVLSAAEEASAKQVKAPKTMRSYNESQKSKKTVASMIQDDKKPVEKRVN IQEAPPPSKSQPSSPPTGSPMDKIIMEKRRKLREKLTPTKKTSPSDSKSSKPEKAGKK PRVWDLGGNSKDAALLDRSRDSPDDVQYQNINSELVGTMQGVIRDLDVESEDEADNED ASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISKNVASE IAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALESKRN GRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLN ALHPAAKHDGRNMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPL MRSLSKLIKVNNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTK FDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLKAINVNAVVNSLMK" misc_feature 195..914 /gene="SrpRalpha" /locus_tag="Dmel_CG2522" /gene_synonym="BEST:CK00309; CG2522; CK00309; Dmel\CG2522; Gtp-bp; GTP-bp; mAb 13D5" /note="Signal recognition particle, alpha subunit, N-terminal; Region: SRP-alpha_N; pfam04086" /db_xref="CDD:461165" misc_feature <885..1613 /gene="SrpRalpha" /locus_tag="Dmel_CG2522" /gene_synonym="BEST:CK00309; CG2522; CK00309; Dmel\CG2522; Gtp-bp; GTP-bp; mAb 13D5" /note="flagellar biosynthetic protein FlhF; Region: FlhF; TIGR03499" /db_xref="CDD:274609" misc_feature 1299..1949 /gene="SrpRalpha" /locus_tag="Dmel_CG2522" /gene_synonym="BEST:CK00309; CG2522; CK00309; Dmel\CG2522; Gtp-bp; GTP-bp; mAb 13D5" /note="C-terminal domain of signal recognition particle receptor alpha subunit; Region: SRalpha_C; cd17876" /db_xref="CDD:349785" misc_feature order(1320..1343,1353..1355,1407..1409,1416..1418, 1434..1436,1611..1613,1809..1811,1815..1817,1887..1898) /gene="SrpRalpha" /locus_tag="Dmel_CG2522" /gene_synonym="BEST:CK00309; CG2522; CK00309; Dmel\CG2522; Gtp-bp; GTP-bp; mAb 13D5" /note="active site" /db_xref="CDD:349785" misc_feature order(1323..1328,1413..1424,1431..1436,1443..1448, 1524..1526,1611..1613,1617..1625,1698..1700,1704..1718, 1725..1727,1809..1811,1815..1820,1824..1826,1896..1898) /gene="SrpRalpha" /locus_tag="Dmel_CG2522" /gene_synonym="BEST:CK00309; CG2522; CK00309; Dmel\CG2522; Gtp-bp; GTP-bp; mAb 13D5" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:349785" ORIGIN 1 ccatcgctag gcaagtgacg tggaacgtgt ggcaactttt gatttgatgc aaatgcaatg 61 cgagtagagt gcgttgttgt tgaaagtgac gacggatcgg aagcgtagct aaaatgttgg 121 actttgtggt gatattcacc aagggcggag tggtgctgtg gcactcgaac gcgtccggta 181 acagtttcgc ctcctgcatc aacagcctga tacgtggcgt cattctggag gagcgcaaca 241 cagaggccaa gtactacgag gaggaccacc tggccgtgca gtttaagctg gacaacgaac 301 tggacctggt ctatgcggcc attttccaga aggtgatcaa actgaactac ctagatggat 361 tcctggccga catgcaggcg gccttcaagg aaaagtacgg cgacatacgt ctgggcgatg 421 actacgactt cgatcgcgaa tatcgacgcg tgctcagcgc cgcggaggag gcgtccgcca 481 agcaagtgaa agcacctaaa accatgcgct cctacaacga gtcacagaaa tcgaaaaaga 541 ccgtcgcctc gatgatacag gacgacaaga agccggtgga gaagcgggtg aacatccagg 601 aggccccgcc accatccaaa tcacagccgt cgtcgccacc gacgggctcc ccaatggaca 661 agatcatcat ggagaaacgg cgcaagctgc gcgaaaagct cacgcccacc aagaagacct 721 cgcccagtga ttccaagtcc agcaagcccg agaaggccgg caagaagcca cgcgtctggg 781 atctgggcgg taattccaag gatgccgctc tgctcgatcg ctccagggat tcgcccgatg 841 atgtgcagta ccagaacatc aacagcgagc tggtgggcac aatgcagggc gtcatccgcg 901 acttggatgt ggagagcgag gacgaggctg acaacgagga tgcatcctct gagggggagg 961 ccgaggagca ggtgcagtca aagaagggca agcgcggtgg cctgctatcc tacttcaagg 1021 gcattgtagg cgccaagacc atgtcgctgg cagatttgca gccggcgctg gagaagatgc 1081 gcgaccatct gatatcgaag aacgtggcct ctgagatagc agctaagctg tgcgactcgg 1141 tggccgccag tttggatggc aagcaaatgg gcacattcga cagcatcgcc agccaggtga 1201 aggaggcgct cacggaatcg ctggtgagga tactatcgcc caaacggcgc atcgacatca 1261 tacgcgatgc cctcgaatcg aagcgcaacg gccgcccgta cacgataatc ttctgcggtg 1321 tcaatggtgt cggcaagtcc accaatttgg ccaagatctg cttttggctg atcgagaacg 1381 atttcaacgt tctgatcgcc gcctgcgata cgttccgagc cggtgccgtc gagcagttgc 1441 gcacacacac acgccatctg aacgcactgc atccggcggc caagcacgat ggacgcaaca 1501 tggtgcagtt gtacgagaag ggttacggca aggatgccgc cggcattgcc atggaggcca 1561 tcaagtttgc ccacgatacg cgagtggatg tggtgcttgt ggacaccgcc ggacgcatgc 1621 aggataacga gccgctgatg cgttccctgt ccaagctaat caaagtgaac aatccggatc 1681 tggtgctatt cgtgggcgag gcactggtgg gcaacgaagc cgtcgaccag ctggtcaagt 1741 tcaatcagtc gctggccgac tactcatcca acgagaaccc gcacatcatc gacggcatag 1801 tgttgaccaa gttcgatacc atcgatgaca aggtgggcgc cgccatctcc atgacctaca 1861 taaccggcca gccaattgtg ttcgtgggca cgggtcagac gtatgccgac ctaaaggcca 1921 tcaatgtgaa cgccgtggtc aattccctga tgaagtaagc cagccgtcga tccggctatc 1981 cttccaatgc tccttgtttg catccactct tttcaccgaa tcaaatatat ggcttttgtc 2041 tagtttgttg ttgcgt