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LOCUS NM_080056 2049 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_080056 VERSION NM_080056.6 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2049) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2049) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2049) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2049) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2049) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2049) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2049) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2049) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2049) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2049) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2049) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2049) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2049) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2049) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2049) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2049) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2049) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2049) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2049) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2049) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2049) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2049) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2049) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_080056.5. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2049 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2049 /gene="Larp7" /locus_tag="Dmel_CG42569" /old_locus_tag="Dmel_CG12058" /gene_synonym="CG12058; CG42569; dLARP7; Dmel\CG42569; dmLarp7" /note="La related protein 7" /map="8D2-8D2" /db_xref="FLYBASE:FBgn0260771" /db_xref="GeneID:44900" CDS 60..1847 /gene="Larp7" /locus_tag="Dmel_CG42569" /old_locus_tag="Dmel_CG12058" /gene_synonym="CG12058; CG42569; dLARP7; Dmel\CG42569; dmLarp7" /note="CG42569 gene product from transcript CG42569-RA; CG42569-PA; Larp7-PA" /codon_start=1 /product="La related protein 7" /protein_id="NP_524795.2" /db_xref="FLYBASE:FBpp0290490" /db_xref="GeneID:44900" /db_xref="FLYBASE:FBgn0260771" /translation="MAAKSIEKEKGEGQEPATSAEKPDPAAPTEPAEENSKEPAPEDA SPDKKDGGRKRKRHLFNSIRGQMEFYFGDANLSKDRFLRRYVEQDPYVPLEIFLTFNK IKTLTQDVQQIAKALSNSQLLELDETELKVKRRTKLPDQRDVNDKTLYVEALPANATH DWLKEVFSRYGPVAYVSLPHYPGTKKIKEFAFIEFEKSGSLEKAVKAFAQIQGVLSVE TDPSDLASVRSFQQQQQIQQKAEQPQSEAEQVELPKRNLKREATDKDREEIHEVKRVK LEEGQPSETSTAGETASETDAEGTAEASEQEDKTEATDGDEAAKKRRRKRKKKAIVDK PNIEPSALELKVLPKTSWSSMRNKYLNLQRRIVSEAKSKLWRENHPQNQQHPHHQQTS HPNHPKPSQLPEAVKEEETGGEVPSDGGEGAVEAAPVPAKRRKAVHKMNMNFYGAGGV ESTKSEEPSQERTPLFKYEPGLIVECSLLKPCTNVKEFKAEMRQYPDIKYVDIKEGDQ VALLRLGTPAAAEELLRQVNCSERQLKVLSGQQETLYWRKIEQDREAKLSKKVRVQQK RGREKVGKMLGKHIKFDDGDDEVQAAAMD" misc_feature 228..464 /gene="Larp7" /locus_tag="Dmel_CG42569" /old_locus_tag="Dmel_CG12058" /gene_synonym="CG12058; CG42569; dLARP7; Dmel\CG42569; dmLarp7" /note="Domain in the RNA-binding Lupus La protein; unknown function; Region: LA; smart00715" /db_xref="CDD:128955" misc_feature order(255..257,264..269,282..284,291..296,300..302, 357..365) /gene="Larp7" /locus_tag="Dmel_CG42569" /gene_synonym="CG12058; CG42569; dLARP7; Dmel\CG42569; dmLarp7" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:153396" misc_feature 501..719 /gene="Larp7" /locus_tag="Dmel_CG42569" /old_locus_tag="Dmel_CG12058" /gene_synonym="CG12058; CG42569; dLARP7; Dmel\CG42569; dmLarp7" /note="RNA recognition motif 1 (RRM1) found in La-related protein 7 (LARP7) and similar proteins; Region: RRM1_LARP7; cd12290" /db_xref="CDD:409732" misc_feature 1470..1703 /gene="Larp7" /locus_tag="Dmel_CG42569" /old_locus_tag="Dmel_CG12058" /gene_synonym="CG12058; CG42569; dLARP7; Dmel\CG42569; dmLarp7" /note="RNA recognition motif 2 in La-related protein 7 (LARP7) and similar proteins; Region: RRM2_LARP7; cd12542" /db_xref="CDD:409958" ORIGIN 1 caaaaaccaa gtgcaatatt ttattcgagt gacttagatt actggttaac tggcactcaa 61 tggctgccaa gagtatcgag aaggagaagg gcgagggtca ggagcccgcg acatcagcgg 121 agaaacccga tccagccgca cccactgaac cagctgagga aaattccaaa gaaccggcgc 181 cggaagacgc atcgccggat aaaaaggatg gtggacgcaa aaggaagagg catttgttca 241 attcgattcg cggtcaaatg gaattctact tcggtgacgc caacttgagc aaggatcgct 301 tccttcggcg ctacgtagag caggatccat atgtaccatt ggaaatcttt ctcactttca 361 ataagataaa gacgctcacc caggatgtgc agcagatagc caaggcacta agcaactccc 421 agcttctgga gctggatgag accgaactaa aggtcaagcg acgtaccaag ctaccagatc 481 agcgcgatgt caacgacaaa accttgtatg tagaggccct gcctgcaaat gccactcacg 541 attggctgaa ggaggtattc agccgctacg gaccggtggc ctacgtgtcc ctgccccact 601 atccgggcac taagaagatc aaggaatttg cctttatcga gttcgaaaag agcgggtcct 661 tggagaaagc tgtgaaggct tttgcccaga tacagggcgt tttgtccgta gaaaccgatc 721 ccagtgatct ggccagtgtg cgctcctttc agcagcagca gcagatacaa cagaaagcgg 781 agcagccgca gtcagaggct gaacaggttg agttgccaaa gcgaaatcta aaaagggagg 841 ccaccgacaa ggatcgcgag gagatacacg aggtgaaacg ggttaagttg gaggagggcc 901 agcctagcga gacctctaca gctggggaaa cagcgagtga aacggatgca gagggcacag 961 ccgaagcctc cgagcaggag gacaaaacag aggcaaccga tggcgatgaa gctgccaaaa 1021 agcgccgtcg caagcgcaag aagaaggcga tcgtggacaa gccaaacatt gagcccagtg 1081 ccctggagct caaggtgcta cccaagacta gttggagcag tatgcgcaat aagtacttga 1141 atctacagcg tcgcatcgtc agtgaggcaa agagcaagct gtggcgagaa aatcacccac 1201 aaaatcagca gcaccctcac caccagcaga ccagtcatcc aaaccatccg aaaccttcac 1261 agctgcccga ggcagttaaa gaggaggaaa ccggaggcga ggtccctagc gatggcggtg 1321 aaggtgccgt agaagcagcg cctgtgccag ccaagcgtcg caaggcggtg cacaagatga 1381 acatgaattt ctacggcgcc ggcggcgtgg aatccaccaa atccgaagaa ccttcgcagg 1441 aacgcacgcc gctctttaaa tacgagcccg ggctgattgt ggagtgctcc ctgctaaaac 1501 catgcaccaa tgttaaagaa tttaaggctg aaatgcgcca atatccggat attaaatatg 1561 tggatattaa ggagggcgac caagtggccc tactacgttt gggcacgcct gccgcagccg 1621 aggaactgct acgccaggtc aactgctccg agaggcagct gaaagtgctc tctggccagc 1681 aggagacgct ctattggcga aaaatcgagc aggatcgcga ggcgaaactc tcgaaaaagg 1741 tgcgcgtgca gcaaaaacgc ggtcgcgaga aagtgggcaa aatgctgggc aagcacatta 1801 agtttgatga tggcgatgat gaagtgcagg cggccgccat ggactgagtc actttcagtt 1861 gaggggtgag tttggatttc atttcaggaa actctataat ataagctata taaatttata 1921 aatgtaagca aaagatacat ttagatctag cacaagattt cgtaatatta gagtaatatt 1981 gtaaaaacaa attgaatttt taaaaaagaa acttcctagt gaaattgaaa taaatcttct 2041 gaatgaaac