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LOCUS NM_078530 3067 bp mRNA linear INV 26-DEC-2023 transcript variant A, mRNA. ACCESSION NM_078530 VERSION NM_078530.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3067) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3067) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3067) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3067) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3067) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3067) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3067) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3067) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3067) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3067) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3067) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3067) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3067) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3067) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3067) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3067) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3067) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3067) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3067) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3067) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3067) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3067) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3067) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_078530.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3067 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3067 /gene="org-1" /locus_tag="Dmel_CG11202" /gene_synonym="CG11202; Dm-ORG-1; Dmel\CG11202; Org-1; org1" /note="optomotor-blind-related-gene-1" /map="7E9-7E10" /db_xref="FLYBASE:FBgn0021767" /db_xref="GeneID:31778" CDS 576..2675 /gene="org-1" /locus_tag="Dmel_CG11202" /gene_synonym="CG11202; Dm-ORG-1; Dmel\CG11202; Org-1; org1" /note="CG11202 gene product from transcript CG11202-RA; CG11202-PA; org-1-PA; optomotor-blind-related gene-1; Optomotor-blind-related-1; Optomotor-blind-related-gene 1; omb-related gene-1; optomotor-blind-related-protein-1" /codon_start=1 /product="optomotor-blind-related-gene-1, isoform A" /protein_id="NP_511085.2" /db_xref="FLYBASE:FBpp0071187" /db_xref="GeneID:31778" /db_xref="FLYBASE:FBgn0021767" /translation="MTHLMGPTECAGAMMTTTSMQFLDTSLTDYNCYGNDYWTSPYMT GGLSPMKQIEACIQTAGKDRSSYKPLEQIDAKLADIETHSTGSTGTANSNSSTSSISN PSCPDQSSSSSSSSVSLPTDYAGVHSEASMAPTAGGTAVTTTSAGGVSASTASKKFKG QHKKDNNSAENGTVKPNSHNISKGESEPVHPSLAQAIVVLETKALWDQFHAQGTEMII TKTGRRMFPTFQVRIGGLDPHATYICMMDFVPMDDKRYRYAFHNSCWVVAGKADPISP PRIHVHPDSPAVGSNWMKQIVSFDKLKLTNNQLDENGHIILNSMHRYQPRFHLVYLPP KNASLDENEHSSHFRTFIFPETSFTAVTAYQNQRVTQLKISSNPFAKGFRDDGTNDVT TGGGSSMSSMSHESQARMKQQQQQQQQQQQQLQQQQQQQQQLKERTAATSNFGLSCSE LAIEQQQQQQQQQGVLQLPATPSSSSTSGNSPDLLGYQMEQQLQQQHQQQQQQQHQSQ QQHLHQQHQANQQQSLLQQSQNHTQYGSYHHAYQAQVQSHPLTPHSSSSASPPATAAP GASAATAAVAGGAGAAGAGGATSATQVMSAANIYSSIGQPYAQEQSNFGAIYHHNAAA AAAAHYHHGHAHGHAHSHAHAHAHGPYASAYDKLKVSRHAAAAAYGMGATYPSFYGSA AHHQMMRPNSYIDLVPR" misc_feature 1158..1730 /gene="org-1" /locus_tag="Dmel_CG11202" /gene_synonym="CG11202; Dm-ORG-1; Dmel\CG11202; Org-1; org1" /note="DNA-binding domain of T-box transcription factor 1 and 10, and related T-box proteifactors; Region: T-box_TBX1_10-like; cd20187" /db_xref="CDD:410313" misc_feature order(1224..1226,1242..1247,1344..1346,1482..1484, 1491..1493,1530..1535,1659..1667,1683..1685,1692..1697, 1704..1724) /gene="org-1" /locus_tag="Dmel_CG11202" /gene_synonym="CG11202; Dm-ORG-1; Dmel\CG11202; Org-1; org1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:410313" ORIGIN 1 aggatactat acgggataat cagttcgcac ttggccggaa gaaggtggca attgagacaa 61 ctcaacgctt tctgccagtc gaattagaaa gaaaacaaat aaaagaagtt caagtcaatc 121 aatcagctaa cacagggaat taaaaacaaa aaacaaaaaa acaaaaaaca aaaaactaca 181 atcgggcaaa ttttcgccag tcaacgcgat cgggccataa aaacaattcg aagagaatta 241 atttgatttt tcattcgatt cttgaactcg atctcgattc tgattgacaa cagcgaaagg 301 ttggcgttgg attttcgcac cactacatac tttttttttg cagtgcacag tgagtgagtg 361 agtgagtgaa tgagtgagtg attgtgtgtg ggtgcaataa tcaaatttga caactgcgcg 421 aataacgttc gagatcaaaa caaattgtgc cggaataaat ggaataaatg ggccaagaac 481 tcgctgcgat ttcctttctt ccactgtgag catcacatat ccagccatca tatatatata 541 tcatatatat atatattcca acgatcacgc tcgccatgac gcacctgatg ggccccactg 601 agtgcgccgg cgccatgatg accaccacat ccatgcagtt cctggacacc agcctaacgg 661 actacaactg ctatggcaac gactactgga catcgccgta catgaccggc ggactcagtc 721 ccatgaagca gatcgaagcc tgcatccaaa cggctggcaa ggatcgcagc tcgtacaagc 781 cgctggagca gatcgatgcc aaattggcgg acatcgagac gcacagtaca ggcagcactg 841 gcaccgcgaa cagcaacagc agcaccagca gcatctcgaa tcccagttgc ccggatcagt 901 cgtcgtcgtc gtcatcgtcg tccgtatcgc tgccaaccga ttatgccggc gtacacagtg 961 aagcctcgat ggcaccaaca gccggcggca cggcagtcac aacgacatca gctggcggag 1021 tcagtgcatc caccgcgtcc aaaaagttca agggacagca caaaaaagac aacaacagtg 1081 cggagaacgg tacagtgaag cccaatagcc ataatatcag caaaggtgaa tcggagccag 1141 tgcatccatc gctggcccag gccattgtgg tgctggagac gaaggcgctg tgggatcagt 1201 tccatgccca gggcaccgaa atgatcatca ccaagacggg ccgacgcatg tttcccacgt 1261 ttcaggtgag gatcggtggt ttggatccac atgccaccta catttgcatg atggactttg 1321 tgcccatgga tgacaaacgc tatcgctacg cctttcacaa ctcctgctgg gtggtggctg 1381 gcaaggcgga tcccatttcc ccgcccagga ttcatgtgca tcccgactcg ccagccgtcg 1441 gctccaattg gatgaagcag atcgtgtcct ttgacaaatt gaagctcacc aataaccagc 1501 tggacgaaaa tggacatatc attctgaact ccatgcatcg ctaccagccg cgtttccatc 1561 tggtttatct gccaccgaag aacgcctcct tggatgagaa cgagcactcc agccactttc 1621 gcactttcat ctttccggaa acgagcttta cggccgtaac tgcctaccag aatcagcggg 1681 tgacacagct gaagatctcc agcaatccat tcgccaaagg ctttcgggat gatggcacca 1741 acgatgtaac cactggcggt ggcagcagca tgtcctccat gagtcacgaa agtcaggcgc 1801 gcatgaagca gcaacagcag cagcagcagc agcagcagca gcaactgcag cagcaacagc 1861 aacagcagca gcaactcaag gagcgaacgg cagcaaccag caactttggc ctgagttgca 1921 gcgaactggc cattgagcaa cagcagcagc agcaacagca acagggagtt ctgcagctac 1981 cggccacgcc ctccagcagc tccacctccg gcaattcacc cgacttgctg ggctaccaga 2041 tggagcagca actgcaacag caacaccaac agcagcagca acagcaacac cagtcccagc 2101 agcaacatct ccaccagcaa caccaggcta accagcaaca atcgctgctc caacagagcc 2161 agaatcacac gcaatatggc agctatcatc atgcgtacca ggcacaggtg cagtcgcatc 2221 ccctaacgcc gcactccagc agctccgcat ccccgccagc aactgctgcg ccgggcgcaa 2281 gtgcagcaac agcagcagta gcgggaggag caggagcagc aggagcaggc ggagcaacgt 2341 cagccacaca agtgatgagt gcggccaata tctattcgag cattggacaa ccctatgccc 2401 aggagcagag caactttggt gcgatctacc atcataatgc tgctgccgca gcggccgctc 2461 actatcatca tggtcatgcc cacggccacg cccatagcca tgcgcacgcc cacgcccacg 2521 gaccatatgc cagcgcctac gacaagctga aggtgtcgcg tcatgcggca gctgccgcct 2581 atggcatggg cgccacctat ccaagttttt acggttcggc tgcacatcac cagatgatgc 2641 gaccgaatag ctacatagat ctggtgccgc gctaagggag caccaactgg gaagagaagg 2701 atttcggatt tcggatactc taagcaatta actgtaaaat tattgtaaaa tccaaacaat 2761 gacgtagtct atcatccata gccaaagcta tacatatata tgtgtaaatc tcatgccaaa 2821 gattcgttct aaaatcaaga atctatttcc aaagtttaga aaggaagcct ttaattttcg 2881 cccattaaaa aatgttttaa caaaacaata acataactaa gcttaagcca aaactataat 2941 aacaggaatt attttttagc aagcttaatt tttaagcatt caaattcatt ctttttttaa 3001 agggatttga ttcttgattt tagaatcaat ttcaagtatt agcagccaga aaaccaaaaa 3061 taaatgc